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BaseInfo

ncRNA ID novel_bna_miR941
Species Brassica napus
Class miRNA
Genome position ChrC2:4758439-4758531 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR538151
Length 20
Mature sequence(if miRNA) 74 - CUCGGAAUUUCCUCGGAAUC - 93
Stem-loop(if miRNA) --                 A C      C               AA
  CUCGGAAUUUCCUCGGA U UUCCGA GGAAUUCCGAGGAAG  U
  ||||||||||||||||| | |||||| |||||||||||||||  A
  GAGCCUUAAAGGAGCCU A AAGGCU CCUUAAGGCUCCUUU  G
UG                 A U      C               GG
Stem-loop sequence CUCGGAAUUUCCUCGGAAUCUUCCGACGGAAUUCCGAGGAAGAAUAGGGUUUCCUCGGAAUUCCCUCGGAAUAAUCCGAGGAAAUUCCGAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013795208.1
ncRNA:20   CU--AAGGCUCCUUUAAGGCUC   1
  ||--||||||||||||||||||
targets:885   GAAUUUCCGAGGAAAUUCCGAG   906

2.5 PREDICTED: Brassica napus PYK10-binding protein 1-like (LOC106355223), mRNA PYK10-binding protein 1-like(LOC106355223) coding protein psRNATarget
XM_013868972.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *||*|||||||=||||||||
targets:225   UAUACCGAGGAGAUUCCGAG   244

2.5 PREDICTED: Brassica napus uncharacterized LOC106428220 (LOC106428220), mRNA uncharacterized LOC106428220(LOC106428220) coding protein psRNATarget
XM_013868972.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *||*|||||||=||||||||
targets:278   UAUACCGAGGAGAUUCCGAG   297

2.5 PREDICTED: Brassica napus uncharacterized LOC106428220 (LOC106428220), mRNA uncharacterized LOC106428220(LOC106428220) coding protein psRNATarget
XM_013830859.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106390405 (LOC106390405), mRNA uncharacterized LOC106390405(LOC106390405) coding protein psRNATarget
XM_013855723.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106415100 (LOC106415100), mRNA uncharacterized LOC106415100(LOC106415100) coding protein psRNATarget
XM_013850864.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106410372 (LOC106410372), mRNA uncharacterized LOC106410372(LOC106410372) coding protein psRNATarget
XM_013850869.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106410378 (LOC106410378), mRNA uncharacterized LOC106410378(LOC106410378) coding protein psRNATarget
XM_013828940.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106388792 (LOC106388792), mRNA uncharacterized LOC106388792(LOC106388792) coding protein psRNATarget
XM_013820161.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106380407 (LOC106380407), mRNA uncharacterized LOC106380407(LOC106380407) coding protein psRNATarget
XM_013828941.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106388794 (LOC106388794), mRNA uncharacterized LOC106388794(LOC106388794) coding protein psRNATarget
XM_013840086.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106399624 (LOC106399624), mRNA uncharacterized LOC106399624(LOC106399624) coding protein psRNATarget
XM_013855724.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106415101 (LOC106415101), mRNA uncharacterized LOC106415101(LOC106415101) coding protein psRNATarget
XM_013822258.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106382258 (LOC106382258), mRNA uncharacterized LOC106382258(LOC106382258) coding protein psRNATarget
XM_013820162.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106380408 (LOC106380408), mRNA uncharacterized LOC106380408(LOC106380408) coding protein psRNATarget
XM_013886278.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106444861 (LOC106444861), mRNA uncharacterized LOC106444861(LOC106444861) coding protein psRNATarget
XM_013836377.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106396079 (LOC106396079), mRNA uncharacterized LOC106396079(LOC106396079) coding protein psRNATarget
XM_013836376.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106396078 (LOC106396078), mRNA uncharacterized LOC106396078(LOC106396078) coding protein psRNATarget
XM_013850863.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106410371 (LOC106410371), mRNA uncharacterized LOC106410371(LOC106410371) coding protein psRNATarget
XM_013826862.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106387049 (LOC106387049), mRNA uncharacterized LOC106387049(LOC106387049) coding protein psRNATarget
XM_013815065.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106375204 (LOC106375204), mRNA uncharacterized LOC106375204(LOC106375204) coding protein psRNATarget
XM_013797133.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106357471 (LOC106357471), mRNA uncharacterized LOC106357471(LOC106357471) coding protein psRNATarget
XM_013850865.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106410374 (LOC106410374), mRNA uncharacterized LOC106410374(LOC106410374) coding protein psRNATarget
XM_013820163.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   AAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106380410 (LOC106380410), mRNA uncharacterized LOC106380410(LOC106380410) coding protein psRNATarget
XM_013793360.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106353604 (LOC106353604), mRNA uncharacterized LOC106353604(LOC106353604) coding protein psRNATarget
XM_013846264.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||||||*||||||||||*
targets:1346   UAUUCCGACGAAAUUCCGAC   1365

2.5 PREDICTED: Brassica napus uncharacterized LOC106405729 (LOC106405729), mRNA uncharacterized LOC106405729(LOC106405729) coding protein psRNATarget
XM_013834880.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||*|||||||*|||||||
targets:612   AAUUGCGAGGAACUUCCGAG   631

2.5 PREDICTED: Brassica napus histone-lysine N-methyltransferase ASHH2-like (LOC106394301), mRNA histone-lysine N-methyltransferase ASHH2-like(LOC106394301) coding protein psRNATarget
XM_013851096.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *||||*||||||*|||||||
targets:4393   CAUUCGGAGGAAUUUCCGAG   4412

2.5 PREDICTED: Brassica napus uncharacterized LOC106410569 (LOC106410569), transcript variant X2, mRNA uncharacterized LOC106410569(LOC106410569) coding protein psRNATarget
XM_013806643.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *||||*||||||*|||||||
targets:4393   CAUUCGGAGGAAUUUCCGAG   4412

2.5 PREDICTED: Brassica napus uncharacterized LOC106366876 (LOC106366876), transcript variant X2, mRNA uncharacterized LOC106366876(LOC106366876) coding protein psRNATarget
XM_013806580.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *||||*||||||*|||||||
targets:4396   CAUUCGGAGGAAUUUCCGAG   4415

2.5 PREDICTED: Brassica napus uncharacterized LOC106366876 (LOC106366876), transcript variant X1, mRNA uncharacterized LOC106366876(LOC106366876) coding protein psRNATarget
XM_013851095.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *||||*||||||*|||||||
targets:4396   CAUUCGGAGGAAUUUCCGAG   4415

2.5 PREDICTED: Brassica napus uncharacterized LOC106410569 (LOC106410569), transcript variant X1, mRNA uncharacterized LOC106410569(LOC106410569) coding protein psRNATarget
XM_013805474.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||*|||||||*|||||||
targets:4536   AAUUGCGAGGAACUUCCGAG   4555

2.5 PREDICTED: Brassica napus histone-lysine N-methyltransferase ASHH2-like (LOC106365950), mRNA histone-lysine N-methyltransferase ASHH2-like(LOC106365950) coding protein psRNATarget
XM_013794598.1
ncRNA:20   CUAAGGCUCCUUUAAGGCUC   1
  *|||*|||||||*|||||||
targets:4396   AAUUGCGAGGAACUUCCGAG   4415

2.5 PREDICTED: Brassica napus histone-lysine N-methyltransferase ASHH2-like (LOC106354617), mRNA histone-lysine N-methyltransferase ASHH2-like(LOC106354617) coding protein psRNATarget
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