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BaseInfo

ncRNA ID	novel_bna_miR938
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:45464671-45464777 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538151
Length	19
Mature sequence(if miRNA)	89 - UUAUUAACUCAAAAACAUG - 107
Stem-loop(if miRNA)	--                                         -  UCGUCACC   UUAUUAACUCAAAAACAUGGCGGUUUUCGAUUACCUUUGGU GC        A   ||||||||||||||||||||||||||||||||||||||||| ||   AAUAAUUGAGUUUUUGUACCGCCAAAAGCUAAUGGAAAUCA CG        C AU                                         A  CCUACUAC
Stem-loop sequence	UUAUUAACUCAAAAACAUGGCGGUUUUCGAUUACCUUUGGUGCUCGUCACCACCAUCAUCCGCAACUAAAGGUAAUCGAAAACCGCCAUGUUUUUGAGUUAAUAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013787035.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:385   AGGGUUUUUGAGUUAAUAA   403 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 2-like (LOC106347494), transcript variant X1, mRNA	P-loop NTPase domain-containing protein LPA1 homolog 2-like(LOC106347494)	coding protein	psRNATarget
XM_013787036.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:323   AGGGUUUUUGAGUUAAUAA   341 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 2-like (LOC106347494), transcript variant X2, mRNA	P-loop NTPase domain-containing protein LPA1 homolog 2-like(LOC106347494)	coding protein	psRNATarget
XM_013820341.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:305   AGGGUUUUUGAGUUAAUAA   323 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 2-like (LOC106380563), transcript variant X1, mRNA	P-loop NTPase domain-containing protein LPA1 homolog 2-like(LOC106380563)	coding protein	psRNATarget
XM_013820343.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:301   AGGGUUUUUGAGUUAAUAA   319 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 2-like (LOC106380563), transcript variant X3, mRNA	P-loop NTPase domain-containing protein LPA1 homolog 2-like(LOC106380563)	coding protein	psRNATarget
XM_013811702.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:375   AGGGUUUUUGAGUUAAUAA   393 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 1-like (LOC106371622), mRNA	P-loop NTPase domain-containing protein LPA1 homolog 1-like(LOC106371622)	coding protein	psRNATarget
XM_013820342.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:176   AGGGUUUUUGAGUUAAUAA   194 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 2-like (LOC106380563), transcript variant X2, mRNA	P-loop NTPase domain-containing protein LPA1 homolog 2-like(LOC106380563)	coding protein	psRNATarget
XM_013850671.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:234   AGGGUUUUUGAGUUAAUAA   252 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 1-like (LOC106410185), mRNA	P-loop NTPase domain-containing protein LPA1 homolog 1-like(LOC106410185)	coding protein	psRNATarget
XM_013848918.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *=*|||||||||||||||| targets:19   AGGGUUUUUGAGUUAAUAA   37 Target Full Sequence	3.0	PREDICTED: Brassica napus P-loop NTPase domain-containing protein LPA1 homolog 1-like (LOC106408091), mRNA	P-loop NTPase domain-containing protein LPA1 homolog 1-like(LOC106408091)	coding protein	psRNATarget
XM_013810275.1	ncRNA:19   GUACAAAAACUCAAUUAUU   1   *|*|||||||||||||||= targets:676   GAGGUUUUUGAGUUAAUAG   694 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106370225 (LOC106370225), mRNA	uncharacterized LOC106370225(BNAC03G65830D)	coding protein	psRNATarget