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BaseInfo

ncRNA ID novel_bna_miR935
Species Brassica napus
Class miRNA
Genome position ChrC5:16492626-16492711 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 24
Mature sequence(if miRNA) 1 - AAAAUAGAGUAGAAAAUAGAGUGA - 24
Stem-loop(if miRNA) --AA                 -A  GAUGAACAAAAAAAAAAC
    AAUAGAGUAGAAAAUAG  GU                  A
    |||||||||||||||||  ||                  A
    UUAUCUCAUUUUUUAUU  AA                  A
GAUA                 CA  UGAGGUUUAUAUCUCAUU
Stem-loop sequence AAAAUAGAGUAGAAAAUAGAGUGAUGAACAAAAAAAAAACAAAUUACUCUAUAUUUGGAGUAAACUUAUUUUUUACUCUAUUAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013896499.1
ncRNA:24   AGUG--------AGAUAAAAGAUGAGAUAAAA   1
  |||=--------|||||||||||||||||*|*
targets:1440   UCAUGAUAGAAGUCUAUUUUCUACUCUAUCUG   1471

2.5 PREDICTED: Brassica napus uncharacterized LOC106454373 (LOC106454373), mRNA uncharacterized LOC106454373(LOC106454373) coding protein psRNATarget