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BaseInfo

ncRNA ID novel_bna_miR929
Species Brassica napus
Class miRNA
Genome position ChrC5:14408030-14408159 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 23
Mature sequence(if miRNA) 1 - UUCGAGGACUUUUUUCGUCGGUA - 23
Stem-loop(if miRNA) --                      --U     GA      --GAA           U   G     A
  CCGACGAAAAAAGUCCUCGGAA   AUUCC  GGAAAU     UUUCCUCGGAA UCC UCGGA A
  ||||||||||||||||||||||   |||||  ||||||     ||||||||||| ||| |||||
  GGCUGCUUUUUUCAGGAGCUUU   UGAGG  CCUUUA     AAAGGAGCCUU AGG AGCCU U
AU                      UAU     AG      AGUAG           U   G     U
Stem-loop sequence CCGACGAAAAAAGUCCUCGGAAUAUUCCGAGGAAAUGAAUUUCCUCGGAAUUCCGUCGGAAAUUUCCGAGGGAUUUCCGAGGAAAGAUGAAUUUCCGAGGAGUUAUUUUCGAGGACUUUUUUCGUCGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013845548.1
ncRNA:23   AUGGCUGCUUUUUUCAGGAGCUU   1
  *|*=||*||=|||||||||||||
targets:2420   GAAUGAAGAGAAAAGUCCUCGAA   2442

2.0 PREDICTED: Brassica napus uncharacterized LOC106404901 (LOC106404901), mRNA uncharacterized LOC106404901(LOC106404901) coding protein psRNATarget