ncRNA ID | novel_bna_miR927 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC8:20779760-20779920 [-] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR538067 |
Length | 20 |
Mature sequence(if miRNA) | 142 - AGGAUGAAGUUCUUAUCGGA - 161 |
Stem-loop(if miRNA) |
--      A    C   U              C                         AC   A   C          UA   AGGAUG AGUU UUA CGGAAGUUAAGAAA UGUUUUUUAACUUUUAACUAAAAAA  UAA AAC GGUUCUUAAA  A   |||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||  ||| ||| ||||||||||  A   UCUUGC UUAA AAU GCCUUUAAUUUUUU ACAAAGAAUUGAAAAUUGAUUUUUU  AUU UUG CUAAGAAUUU  G AA      C    A   U              A                         CA   C   A          CA |
Stem-loop sequence | AGGAUGAAGUUCUUAUCGGAAGUUAAGAAACUGUUUUUUAACUUUUAACUAAAAAAACUAAAAACCGGUUCUUAAAUAAAGACUUUAAGAAUCAGUUCUUAACUUUUUUAGUUAAAAGUUAAGAAACAAUUUUUUAAUUUCCGUUAAAAAUUCCGUUCUAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013845798.1 |
|
3.0 | PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase MEE39 (LOC106405218), transcript variant X1, mRNA | probable LRR receptor-like serine/threonine-protein kinase MEE39(LOC106405218) | coding protein | psRNATarget |