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BaseInfo

ncRNA ID novel_bna_miR927
Species Brassica napus
Class miRNA
Genome position ChrC8:20779760-20779920 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR538067
Length 20
Mature sequence(if miRNA) 142 - AGGAUGAAGUUCUUAUCGGA - 161
Stem-loop(if miRNA) --      A    C   U              C                         AC   A   C          UA
  AGGAUG AGUU UUA CGGAAGUUAAGAAA UGUUUUUUAACUUUUAACUAAAAAA  UAA AAC GGUUCUUAAA  A
  |||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||  ||| ||| ||||||||||  A
  UCUUGC UUAA AAU GCCUUUAAUUUUUU ACAAAGAAUUGAAAAUUGAUUUUUU  AUU UUG CUAAGAAUUU  G
AA      C    A   U              A                         CA   C   A          CA
Stem-loop sequence AGGAUGAAGUUCUUAUCGGAAGUUAAGAAACUGUUUUUUAACUUUUAACUAAAAAAACUAAAAACCGGUUCUUAAAUAAAGACUUUAAGAAUCAGUUCUUAACUUUUUUAGUUAAAAGUUAAGAAACAAUUUUUUAAUUUCCGUUAAAAAUUCCGUUCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013845798.1
ncRNA:20   AGGCUAUUCUUGAAGUAGGA   1
  ||*|||=||||||||||||*
targets:166   UCAGAUGAGAACUUCAUCCA   185

3.0 PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase MEE39 (LOC106405218), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase MEE39(LOC106405218) coding protein psRNATarget