Search result

BaseInfo

ncRNA ID novel_bna_miR925
Species Brassica napus
Class miRNA
Genome position ChrC7:8344804-8344885 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR538067
Length 20
Mature sequence(if miRNA) 1 - UGGAGAAGCAGGGCACGUGC - 20
Stem-loop(if miRNA) --     A  C              CAAAUGA      G   UA
  UGGAG AG AGGGCACGUGCGAA       GUUUGA CAG  C
  ||||| || ||||||||||||||       |||||| |||
  ACCUC UC UCUUGUGCACGCUU       UAAACU GUU  A
CA     A  A              ------A      A   UU
Stem-loop sequence UGGAGAAGCAGGGCACGUGCGAACAAAUGAGUUUGAGCAGUACAUUUUGAUCAAAUAUUCGCACGUGUUCUACUACUCCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KC966757.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:624   UUACGUGCCCUGCUUCUCCA   643

1.0 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds NA coding protein psRNATarget
NM_001316090.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:624   UUACGUGCCCUGCUUCUCCA   643

1.0 Brassica napus NAC domain-containing protein 100-like (LOC106422698), mRNA NAC domain-containing protein 100-like(LOC106422698) coding protein psRNATarget
XM_013891314.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:746   UUACGUGCCCUGCUUCUCCA   765

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106449576), mRNA NAC domain-containing protein 100-like(LOC106449576) coding protein psRNATarget
XM_013860292.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:754   UUACGUGCCCUGCUUCUCCA   773

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106419492), mRNA NAC domain-containing protein 100-like(LOC106419492) coding protein psRNATarget
KC966745.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:811   UUACGUGCCCUGCUUCUCCA   830

1.0 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds NA coding protein psRNATarget
XM_013881471.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:781   UUACGUGCCCUGCUUCUCCA   800

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106439922), mRNA NAC domain-containing protein 100-like(LOC106439922) coding protein psRNATarget
XM_013868801.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:828   UUACGUGCCCUGCUUCUCCA   847

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100 (LOC106428056), mRNA NAC domain-containing protein 100(LOC106428056) coding protein psRNATarget
XM_013819156.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:757   UUACGUGCCCUGCUUCUCCA   776

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106379142), mRNA NAC domain-containing protein 100-like(LOC106379142) coding protein psRNATarget
XM_013885712.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:820   UUACGUGCCCUGCUUCUCCA   839

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106444178), mRNA NAC domain-containing protein 100-like(LOC106444178) coding protein psRNATarget
XM_013822801.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:820   UUACGUGCCCUGCUUCUCCA   839

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106382745), mRNA NAC domain-containing protein 100-like(LOC106382745) coding protein psRNATarget
XM_013835719.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||*||||||||||||||||
targets:711   GCAAGUGCCCUGCUUCUCCA   730

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22-like (LOC106395207), mRNA NAC domain-containing protein 21/22-like(LOC106395207) coding protein psRNATarget
XM_013793969.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||*||||||||||||||||
targets:788   GCAAGUGCCCUGCUUCUCCA   807

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22-like (LOC106354108), mRNA NAC domain-containing protein 21/22-like(LOC106354108) coding protein psRNATarget
XM_013840299.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||*||||||||||||||||
targets:735   GCAAGUGCCCUGCUUCUCCA   754

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22-like (LOC106399855), mRNA NAC domain-containing protein 21/22-like(LOC106399855) coding protein psRNATarget
KC966749.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||*||||||||||||||||
targets:672   GCAAGUGCCCUGCUUCUCCA   691

1.0 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds NA coding protein psRNATarget
NM_001315922.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||*||||||||||||||||
targets:672   GCAAGUGCCCUGCUUCUCCA   691

1.0 Brassica napus NAC domain-containing protein 21/22 (LOC106429030), mRNA NAC domain-containing protein 21/22(LOC106429030) coding protein psRNATarget
XM_013894441.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||*||||||||||||||||
targets:749   GCAAGUGCCCUGCUUCUCCA   768

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22 (LOC106452350), mRNA NAC domain-containing protein 21/22(LOC106452350) coding protein psRNATarget
XM_013839499.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||||||=||||||||||||
targets:669   GCACGUGUCCUGCUUCUCCA   688

1.5 PREDICTED: Brassica napus protein CUP-SHAPED COTYLEDON 1 (LOC106399016), mRNA protein CUP-SHAPED COTYLEDON 1(LOC106399016) coding protein psRNATarget
XM_013808576.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||||||||||||*|||||*
targets:134   GCACGUGCCCUGCCUCUCCU   153

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase ORTHRUS 2-like (LOC106368575), mRNA E3 ubiquitin-protein ligase ORTHRUS 2-like(LOC106368575) coding protein psRNATarget
XM_013808575.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  |||||||||||||*|||||*
targets:134   GCACGUGCCCUGCCUCUCCU   153

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase ORTHRUS 2-like (LOC106368573), mRNA E3 ubiquitin-protein ligase ORTHRUS 2-like(LOC106368573) coding protein psRNATarget
KF738276.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:642   UCACGUGACCUGCUUCUCCG   661

2.5 Brassica napus NAC transcription factor 92 (NAC92.1) mRNA, complete cds NA coding protein psRNATarget
NM_001316064.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:642   UCACGUGACCUGCUUCUCCG   661

2.5 Brassica napus NAC domain-containing protein 92-like (LOC106449568), mRNA NAC domain-containing protein 92-like(LOC106449568) coding protein psRNATarget
XM_013843743.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:771   UCACGUGACCUGCUUCUCCG   790

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106402917), mRNA NAC domain-containing protein 92-like(LOC106402917) coding protein psRNATarget
XM_013792301.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:749   UCACGUGACCUGCUUCUCCG   768

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106352671), mRNA NAC domain-containing protein 92-like(LOC106352671) coding protein psRNATarget
XM_013839855.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||||*|||||||||=
targets:918   UCACGUGCCAUGCUUCUCCG   937

2.5 PREDICTED: Brassica napus NAC domain-containing protein 59-like (LOC106399372), mRNA NAC domain-containing protein 59-like(LOC106399372) coding protein psRNATarget
XM_013873151.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:773   UCACGUGACCUGCUUCUCCG   792

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106432307), transcript variant X3, mRNA NAC domain-containing protein 92-like(LOC106432307) coding protein psRNATarget
XM_013873150.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:778   UCACGUGACCUGCUUCUCCG   797

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106432307), transcript variant X2, mRNA NAC domain-containing protein 92-like(LOC106432307) coding protein psRNATarget
XM_013873148.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:813   UCACGUGACCUGCUUCUCCG   832

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106432307), transcript variant X1, mRNA NAC domain-containing protein 92-like(LOC106432307) coding protein psRNATarget
XM_013839678.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||||*|||||||||=
targets:888   UCACGUGCCAUGCUUCUCCG   907

2.5 PREDICTED: Brassica napus NAC domain-containing protein 59-like (LOC106399205), mRNA NAC domain-containing protein 59-like(LOC106399205) coding protein psRNATarget
XM_013879452.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *|=|*||||||||||||||*
targets:709   UCGCCUGCCCUGCUUCUCCC   728

3.0 PREDICTED: Brassica napus UDP-glucuronic acid decarboxylase 4-like (LOC106438334), mRNA UDP-glucuronic acid decarboxylase 4-like(LOC106438334) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.