Search result

BaseInfo

ncRNA ID	novel_bna_miR910
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:57836295-57836398 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538067
Length	19
Mature sequence(if miRNA)	1 - AGGACACGGCGUUCGGACG - 19
Stem-loop(if miRNA)	--   -  A     UU   AC         GAC   GUUUC          GAAAC   AGG AC CGGCG  CGG  GCGGCGUCA   GCA     CUGCGUCAAC     G   ||| || |||||  |||  |||||||||   |||     ||||||||||     A   UCC UG GCCGC  GUC  CGUCGCAGU   UGU     GACGCAGUUG     A CG   A  -     -C   GC         ---   ---AA          AGAAC
Stem-loop sequence	AGGACACGGCGUUCGGACGCGGCGUCAGACGCAGUUUCCUGCGUCAACGAAACGAACAAGAGUUGACGCAGAAUGUUGACGCUGCCGCUGCCGCCGGUACCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013786458.1	ncRNA:19   GCAGGCUUGCGGCACAGGA   1   |||||||||||||*||||| targets:691   CGUCCGAACGCCGCGUCCU   709 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106346977 (LOC106346977), transcript variant X3, mRNA	uncharacterized LOC106346977(LOC106346977)	coding protein	psRNATarget
XM_013786456.1	ncRNA:19   GCAGGCUUGCGGCACAGGA   1   |||||||||||||*||||| targets:470   CGUCCGAACGCCGCGUCCU   488 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106346977 (LOC106346977), transcript variant X1, mRNA	uncharacterized LOC106346977(LOC106346977)	coding protein	psRNATarget
XM_013786457.1	ncRNA:19   GCAGGCUUGCGGCACAGGA   1   |||||||||||||*||||| targets:470   CGUCCGAACGCCGCGUCCU   488 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106346977 (LOC106346977), transcript variant X2, mRNA	uncharacterized LOC106346977(LOC106346977)	coding protein	psRNATarget
XM_013868814.1	ncRNA:19   GCAGGCUUGCGGCACAGGA   1   |||||||||||||*||||| targets:552   CGUCCGAACGCCGCGUCCU   570 Target Full Sequence	1.5	PREDICTED: Brassica napus protein SABRE-like (LOC106428071), mRNA	protein SABRE-like(LOC106428071)	coding protein	psRNATarget