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BaseInfo

ncRNA ID novel_bna_miR902
Species Brassica napus
Class miRNA
Genome position ChrC4:31190436-31190603 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 21
Mature sequence(if miRNA) 1 - UCCAUAAUUAGGUUGUUGGUA - 21
Stem-loop(if miRNA) --                    A    C                                                  A    U
  UCCAUAAUUAGGUUGUUGGU AGCC CGAACCCAGGACCUCACCCUUUAACAGCAUUCCCACUGGACAAGCUGUCA CAAU G
  |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
  AGGUAUUAAUCCAACAACCA UCGG GCUUGGGUCCUGGAGUGGGAAAUUGUUGUAAGGGUGACCUGUUCGACAGU GUUA A
UG                    C    A                                                  G    U
Stem-loop sequence UCCAUAAUUAGGUUGUUGGUAAGCCCCGAACCCAGGACCUCACCCUUUAACAGCAUUCCCACUGGACAAGCUGUCAACAAUUGAUAUUGGUGACAGCUUGUCCAGUGGGAAUGUUGUUAAAGGGUGAGGUCCUGGGUUCGAGGCUCACCAACAACCUAAUUAUGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013790150.1
ncRNA:21   AUGGUUGUUGGAUUAAUACCU   1
  *||||||||||||||||||||
targets:618   CACCAACAACCUAAUUAUGGA   638

0.0 PREDICTED: Brassica napus uncharacterized LOC106350242 (LOC106350242), mRNA uncharacterized LOC106350242(LOC106350242) coding protein psRNATarget
XM_013813606.1
ncRNA:21   AUGGUUGUUGGAUUAAUACCU   1
  *|||||||||||||||||||=
targets:774   CACCAACAACCUAAUUAUGGG   794

1.0 PREDICTED: Brassica napus uncharacterized LOC106373435 (LOC106373435), mRNA uncharacterized LOC106373435(LOC106373435) coding protein psRNATarget