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BaseInfo

ncRNA ID ath-miR5022
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:22372462-22372578 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - GUCAUGGGGUAUGAUCGAAUG - 38
Stem-loop(if miRNA) --    -A        A            U             U     CUCAU       G
  GUAU  AACUAGAA ACUGUCAUGGGG AUGAUCGAAUGUU GUGUA     UUUUCGU G
  ||||  |||||||| |||||||||||| ||||||||||||| |||||     |||||||
  UAUA  UUGAUCUU UGAUAGUACCUC UACUAGUUUACAA CGUAU     AGAAGUA A
UA    GC        A            U             -     -----       U
Stem-loop sequence GUAUAAACUAGAAAACUGUCAUGGGGUAUGAUCGAAUGUUUGUGUACUCAUUUUUCGUGGAUAUGAAGAUAUGCAACAUUUGAUCAUUCUCCAUGAUAGUAUUCUAGUUCGAUAUAU

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).