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BaseInfo

ncRNA ID	novel_bna_miR890
Species	Brassica napus
Class	miRNA
Genome position	ChrA10:14904879-14904999 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538066
Length	20
Mature sequence(if miRNA)	1 - UUGACUGUUGUUGUUGUACG - 20
Stem-loop(if miRNA)	-UUG   G             AA  C  A   GG  A   G       -----  UG UG         ACU UUGUUGUUGUACG  GC UG UGA  AG CCG UUCUGUU     GA  A  AUUGG     ||| |||||||||||||  || || |||  || ||| |||||||     ||  |  ||||A     UGA GAUAACAACGUGU  CG AC ACU  UC GGC AGGGCGA     UU  U  UAGCG GCAA   G             -A  -  G   -A  -   A       UGUUG  GU GU
Stem-loop sequence	UUGACUGUUGUUGUUGUACGAAGCCUGAUGAGGAGACCGGUUCUGUUGAUGAUGAUUGGAGCGAUUGUUGUUGUUGUAGCGGGAACGGCUAUCAGCAGCAUGUGCAACAAUAGGAGUAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013841693.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   *||||||||||||||||=|| targets:204   AGUACAACAACAACAGUUAA   223 Target Full Sequence	1.5	PREDICTED: Brassica napus loricrin-like (LOC106401221), mRNA	loricrin-like(LOC106401221)	coding protein	psRNATarget
XM_013807162.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   *||||||||||||||||=|| targets:26   AGUACAACAACAACAGUUAA   45 Target Full Sequence	1.5	PREDICTED: Brassica napus annexin A7-like (LOC106367398), mRNA	annexin A7-like(LOC106367398)	coding protein	psRNATarget
XM_013840846.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   *||||||||||||||||=|| targets:204   AGUACAACAACAACAGUUAA   223 Target Full Sequence	1.5	PREDICTED: Brassica napus loricrin-like (LOC106400488), mRNA	loricrin-like(LOC106400488)	coding protein	psRNATarget
XM_013885828.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   *||||||||||||||||*|| targets:134   GGUACAACAACAACAGUAAA   153 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106444340 (LOC106444340), mRNA	uncharacterized LOC106444340(LOC106444340)	coding protein	psRNATarget
XM_013872569.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   |*||||||||||*||||||| targets:320   CCUACAACAACACCAGUCAA   339 Target Full Sequence	2.5	PREDICTED: Brassica napus gibberellin-regulated protein 14-like (LOC106431743), transcript variant X2, mRNA	gibberellin-regulated protein 14-like(LOC106431743)	coding protein	psRNATarget
XM_013872566.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   |*||||||||||*||||||| targets:320   CCUACAACAACACCAGUCAA   339 Target Full Sequence	2.5	PREDICTED: Brassica napus gibberellin-regulated protein 14-like (LOC106431743), transcript variant X1, mRNA	gibberellin-regulated protein 14-like(LOC106431743)	coding protein	psRNATarget
XM_013869140.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   **|||||||||||||||*|| targets:4178   ACUACAACAACAACAGUGAA   4197 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106428390 (LOC106428390), mRNA	uncharacterized LOC106428390(LOC106428390)	coding protein	psRNATarget
XM_013847512.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   =**=|||||||||||||||| targets:259   UUCGCAACAACAACAGUCAA   278 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106406779 (LOC106406779), mRNA	uncharacterized LOC106406779(BNACNNG00580D)	coding protein	psRNATarget
XM_013812343.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   ***||||||||||||||||= targets:503   AUAACAACAACAACAGUCAG   522 Target Full Sequence	3.0	PREDICTED: Brassica napus zinc finger protein CONSTANS-LIKE 1-like (LOC106372182), mRNA	zinc finger protein CONSTANS-LIKE 1-like(LOC106372182)	coding protein	psRNATarget
KC414029.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   *|*|=||||||||||||||* targets:248   AGAAUAACAACAACAGUCAC   267 Target Full Sequence	3.0	Brassica napus ABA insensitive PP2C protein 5 (ABI5.1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001316130.1	ncRNA:20   GCAUGUUGUUGUUGUCAGUU   1   *|*|=||||||||||||||* targets:248   AGAAUAACAACAACAGUCAC   267 Target Full Sequence	3.0	Brassica napus protein ABSCISIC ACID-INSENSITIVE 5 (LOC106451127), mRNA	protein ABSCISIC ACID-INSENSITIVE 5(LOC106451127)	coding protein	psRNATarget