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BaseInfo

ncRNA ID	novel_bna_miR886
Species	Brassica napus
Class	miRNA
Genome position	ChrC6:21484271-21484438 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538066;SRR1363496
Length	25
Mature sequence(if miRNA)	1 - AACUAAAAAAAACUAAGAACCGGCU - 25
Stem-loop(if miRNA)	--          AA        C  C       CCAU    -----    CGG        GAAUG          -C            A   AACUAAAAAA  CUAAGAAC GG UCUUAGA    GAUU     AACC   GGUUCUUA     GAUUUUUUAG  GAAAGUUAAGAA A   ||||||||||  |||||||| || |||||||    ||||     ||||   ||||||||     ||||||||||  |||||||||||| U   UUGAUUUUUU  GAUUCUUG CC AGAAUUU    CUGA     UUGG   CUAAGAAU     UUAAAAAAUC  UUUUCAAUUCUU G AA          -C        U  A       AUUC    AAUUU    ---        -----          AA            U
Stem-loop sequence	AACUAAAAAAAACUAAGAACCGGCUCUUAGACCAUGAUUAACCCGGGGUUCUUAGAAUGGAUUUUUUAGCGAAAGUUAAGAAAAUGUUUCUUAACUUUUAACUAAAAAAUUUAAGAAUCGGUUUUUAAAGUCCUUAUUUAAGAACCUGUUCUUAGCUUUUUUAGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013884985.1	ncRNA:25   UCGGCCAAGAAUCAAAAAAAAUCAA   1   ||*||*||||||||||||*|||||| targets:2   AGACGUUUCUUAGUUUUUCUUAGUU   26 Target Full Sequence	1.5	PREDICTED: Brassica napus putative lipid-binding protein AIR1 (LOC106443416), mRNA	putative lipid-binding protein AIR1(LOC106443416)	coding protein	psRNATarget
XM_013813202.1	ncRNA:25   UCGGCCAAGAAUCAAAAAAAAUCAA   1   |||=--|||||*||||||||||||* targets:675   AGCU--UUCUUUGUUUUUUUUAGUC   697 Target Full Sequence	2.0	PREDICTED: Brassica napus 60S ribosomal protein L17-2-like (LOC106372951), mRNA	60S ribosomal protein L17-2-like(LOC106372951)	coding protein	psRNATarget
XM_013832846.1	ncRNA:25   UCGGCCAAGAAUCAAAAAAAAUCAA   1   |||=--|||||*||||||||||||* targets:577   AGCU--UUCUUUGUUUUUUUUAGUC   599 Target Full Sequence	2.0	PREDICTED: Brassica napus 60S ribosomal protein L17-2 (LOC106392065), mRNA	60S ribosomal protein L17-2(LOC106392065)	coding protein	psRNATarget
XM_013839839.1	ncRNA:25   UCGGCCAA-GAAUCAAAAAAAAUCAA   1   **=|**||-||||||||||||||||| targets:756   UUUCUAUUGCUUAGUUUUUUUUAGUU   781 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106399358 (LOC106399358), mRNA	uncharacterized LOC106399358(LOC106399358)	coding protein	psRNATarget