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BaseInfo

ncRNA ID	novel_bna_miR885
Species	Brassica napus
Class	miRNA
Genome position	ChrC6:16010608-16010740 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538066
Length	21
Mature sequence(if miRNA)	1 - AACGGAAUAUAAGAACCUGAC - 21
Stem-loop(if miRNA)	--AA             C   AC                      C         G        UA     CGGAAUAUAAGAA CUG  UCUUAACUUUUAACUAAAAAAG UAAGAACCG CUCUUAAA  A     ||||||||||||| |||  |||||||||||||||||||||| ||||||||| ||||||||  G     GCUUUAUAUUCUU GAC  AGAAUUGAAAAUUGAUUUUUUC AUUCUUGGC GAGAAUUU  A AAUC             A   AA                      A         A        UG
Stem-loop sequence	AACGGAAUAUAAGAACCUGACUCUUAACUUUUAACUAAAAAAGCUAAGAACCGGCUCUUAAAUAAGAGUUUUAAGAGACGGUUCUUAACUUUUUUAGUUAAAAGUUAAGAAACAGAUUCUUAUAUUUCGCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013824599.1	ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1   *|||||||||||||*|||||* targets:776   AUCAGGUUCUUAUACUCCGUC   796 Target Full Sequence	2.5	PREDICTED: Brassica napus probable WRKY transcription factor 38 (LOC106384659), mRNA	probable WRKY transcription factor 38(LOC106384659)	coding protein	psRNATarget
XM_013830747.1	ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1   |*|=|||||||||||||||*| targets:24   GACGGGUUCUUAUAUUCCGAU   44 Target Full Sequence	2.5	PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X1, mRNA	CBS domain-containing protein CBSCBSPB2-like(LOC106390313)	coding protein	psRNATarget
XM_013830748.1	ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1   |*|=|||||||||||||||*| targets:24   GACGGGUUCUUAUAUUCCGAU   44 Target Full Sequence	2.5	PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X2, mRNA	CBS domain-containing protein CBSCBSPB2-like(LOC106390313)	coding protein	psRNATarget
XM_013807200.1	ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1   **|||*|||||||||||*||| targets:1455   CACAGUUUCUUAUAUUCGGUU   1475 Target Full Sequence	2.5	PREDICTED: Brassica napus protein NRT1/ PTR FAMILY 4.4-like (LOC106367429), mRNA	protein NRT1/ PTR FAMILY 4.4-like(LOC106367429)	coding protein	psRNATarget
XM_013861900.1	ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1   **|||*|||||||||||*||| targets:1455   CACAGUUUCUUAUAUUCGGUU   1475 Target Full Sequence	2.5	PREDICTED: Brassica napus protein NRT1/ PTR FAMILY 4.4 (LOC106421047), mRNA	protein NRT1/ PTR FAMILY 4.4(LOC106421047)	coding protein	psRNATarget