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BaseInfo

ncRNA ID	novel_bna_miR883
Species	Brassica napus
Class	miRNA
Genome position	ChrC6:33940451-33940521 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538066
Length	21
Mature sequence(if miRNA)	51 - AGGAAUAGGAAAUCUAAUGUC - 71
Stem-loop(if miRNA)	--      -      U   ------AC       AAGAG   CGUUAG UUUCCU UUC        GUUCGAC     A   |||||| |||||| |||        |||||||   GUAAUC AAAGGA AAG        UAAGUUG     C CU      U      U   GACUAACA       CAAAA
Stem-loop sequence	CGUUAGUUUCCUUUUCACGUUCGACAAGAGACAAAACGUUGAAUACAAUCAGGAAUAGGAAAUCUAAUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013870672.1	ncRNA:21   CUGUAAU--CUAAAGGAUAAGGA   1   **|||||--|||||||||||||| targets:176   UUCAUUAUAGAUUUCCUAUUCCU   198 Target Full Sequence	2.5	PREDICTED: Brassica napus RNA-directed DNA polymerase homolog (LOC106429907), mRNA	RNA-directed DNA polymerase homolog(LOC106429907)	coding protein	psRNATarget
XM_013818581.1	ncRNA:21   CUGUAAU--CUAAAGGAUAAGGA   1   **|||||--|||||||||||||| targets:176   UUCAUUAUAGAUUUCCUAUUCCU   198 Target Full Sequence	2.5	PREDICTED: Brassica napus RNA-directed DNA polymerase homolog (LOC106378457), mRNA	RNA-directed DNA polymerase homolog(LOC106378457)	coding protein	psRNATarget
XM_013808339.1	ncRNA:21   CUGUAAUCUAAAGGAUAAGGA   1   ***|||=*||||||||||||| targets:75   UCGAUUGCAUUUCCUAUUCCU   95 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106368392 (LOC106368392), transcript variant X1, mRNA	uncharacterized LOC106368392(LOC106368392)	coding protein	psRNATarget
XM_013808340.1	ncRNA:21   CUGUAAUCUAAAGGAUAAGGA   1   ***|||=*||||||||||||| targets:75   UCGAUUGCAUUUCCUAUUCCU   95 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106368392 (LOC106368392), transcript variant X2, mRNA	uncharacterized LOC106368392(LOC106368392)	coding protein	psRNATarget
XM_013808341.1	ncRNA:21   CUGUAAUCUAAAGGAUAAGGA   1   ***|||=*||||||||||||| targets:73   UCGAUUGCAUUUCCUAUUCCU   93 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106368392 (LOC106368392), transcript variant X3, mRNA	uncharacterized LOC106368392(LOC106368392)	coding protein	psRNATarget
XM_013808344.1	ncRNA:21   CUGUAAUCUAAAGGAUAAGGA   1   ***|||=*||||||||||||| targets:73   UCGAUUGCAUUUCCUAUUCCU   93 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106368392 (LOC106368392), transcript variant X5, mRNA	uncharacterized LOC106368392(LOC106368392)	coding protein	psRNATarget
XM_013808342.1	ncRNA:21   CUGUAAUCUAAAGGAUAAGGA   1   ***|||=*||||||||||||| targets:73   UCGAUUGCAUUUCCUAUUCCU   93 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106368392 (LOC106368392), transcript variant X4, mRNA	uncharacterized LOC106368392(LOC106368392)	coding protein	psRNATarget