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BaseInfo

ncRNA ID	novel_bna_miR872
Species	Brassica napus
Class	miRNA
Genome position	ChrC1:301769-301934 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538066
Length	22
Mature sequence(if miRNA)	145 - UAGCGGAAUAUAAGAACCUAUC - 166
Stem-loop(if miRNA)	--                  UA          C                                 --AAG   UU       CU   UAGCGGAAUAUAAGAACC  UCUCUUAAUU UUAAUUAAAAAAGCUAAGAACUGGUUCUUAAAU     AGU  UAAGAGU  U   ||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||     |||  |||||||   AUUGCCUUAUAUUCUUGG  AGAGAAUUGA AAUUGAUUUUUUCGAUUCUUGGCCAGGAAUUUA     UCA  AUUUUCA  U GA                  GC          A                                 AAAAA   --       AU
Stem-loop sequence	UAGCGGAAUAUAAGAACCUAUCUCUUAAUUCUUAAUUAAAAAAGCUAAGAACUGGUUCUUAAAUAAGAGUUUUAAGAGUCUUUUAACUUUUAACUAAAAAAUUUAAGGACCGGUUCUUAGCUUUUUUAGUUAAAAGUUAAGAGACGGGUUCUUAUAUUCCGUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830748.1	ncRNA:22   CUAUCCAAGAAUAUAAGGCGAU   1   ||*=|||||||||||||||*|| targets:24   GACGGGUUCUUAUAUUCCGAUA   45 Target Full Sequence	2.5	PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X2, mRNA	CBS domain-containing protein CBSCBSPB2-like(LOC106390313)	coding protein	psRNATarget
XM_013830747.1	ncRNA:22   CUAUCCAAGAAUAUAAGGCGAU   1   ||*=|||||||||||||||*|| targets:24   GACGGGUUCUUAUAUUCCGAUA   45 Target Full Sequence	2.5	PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X1, mRNA	CBS domain-containing protein CBSCBSPB2-like(LOC106390313)	coding protein	psRNATarget
XM_013854219.1	ncRNA:22   CUAUCCAAGAAUAUAAGGCGAU   1   ||-|||*||*|||||||||||| targets:999   GA-AGGCUCGUAUAUUCCGCUA   1019 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106413445 (LOC106413445), mRNA	uncharacterized LOC106413445(LOC106413445)	coding protein	psRNATarget