ncRNA ID | novel_bna_miR868 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA6:10428500-10428679 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR538066 |
Length | 21 |
Mature sequence(if miRNA) | 160 - ACGUAGGACAAUUAAAUCAUC - 180 |
Stem-loop(if miRNA) |
--      U     -  G          U  AC  AU  A  U   UC        U   U  -     U    CAACAAAACAUUUAAUU   UGAUUU AAUUG CU ACGUGGACAC CU  CU  UG UC UAU  CCCUUUUA UAU GU UAGAU UCUU                 A   |||||| ||||| || |||||||||| ||  ||  || || |||  |||||||| ||| || ||||| ||||                 A   ACUAAA UUAAC GG UGCACCUGUG GA  GA  AC AG AUA  GGGAAAAU AUA CA AUCUA AGGA                 A CU      -     A  A          U  GA  CU  G  U   UU        U   U  U     U    AUACAUUCCACCCUAAA |
Stem-loop sequence | UGAUUUUAAUUGCUGACGUGGACACUCUACCUAUUGAUCUUAUUCCCCUUUUAUUAUUGUUAGAUUUCUUCAACAAAACAUUUAAUUAAAAAAUCCCACCUUACAUAAGGAUAUCUAUACUAUAUUAAAAGGGUUAUAUGAGCAUCAGAGAGUGUGUCCACGUAGGACAAUUAAAUCAUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013836768.1 |
|
0.0 | PREDICTED: Brassica napus probable inactive poly [ADP-ribose] polymerase SRO2 (LOC106396383), transcript variant X2, mRNA | probable inactive poly [ADP-ribose] polymerase SRO2(LOC106396383) | coding protein | psRNATarget |