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BaseInfo

ncRNA ID novel_bna_miR867
Species Brassica napus
Class miRNA
Genome position ChrA6:10426764-10426943 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR538066
Length 21
Mature sequence(if miRNA) 160 - ACGUAGGACAAUUAAAUCAUC - 180
Stem-loop(if miRNA) --      U     -  G          U  AC  AU  A  U   UC        U   U  -     U    CAACAAAACAUUUAAUU
  UGAUUU AAUUG CU ACGUGGACAC CU  CU  UG UC UAU  CCCUUUUA UAU GU UAGAU UCUU                 A
  |||||| ||||| || |||||||||| ||  ||  || || |||  |||||||| ||| || ||||| ||||                 A
  ACUAAA UUAAC GG UGCACCUGUG GA  GA  AC AG AUA  GGGAAAAU AUA CA AUCUA AGGA                 A
CU      -     A  A          U  GA  CU  G  U   UU        U   U  U     U    AUACAUUCCACCCUAAA
Stem-loop sequence UGAUUUUAAUUGCUGACGUGGACACUCUACCUAUUGAUCUUAUUCCCCUUUUAUUAUUGUUAGAUUUCUUCAACAAAACAUUUAAUUAAAAAAUCCCACCUUACAUAAGGAUAUCUAUACUAUAUUAAAAGGGUUAUAUGAGCAUCAGAGAGUGUGUCCACGUAGGACAAUUAAAUCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013836768.1
ncRNA:21   CUACUAAAUUAACAGGAUGCA   1
  |*|||||||||||||||||||
targets:547   GCUGAUUUAAUUGUCCUACGU   567

0.0 PREDICTED: Brassica napus probable inactive poly [ADP-ribose] polymerase SRO2 (LOC106396383), transcript variant X2, mRNA probable inactive poly [ADP-ribose] polymerase SRO2(LOC106396383) coding protein psRNATarget