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BaseInfo

ncRNA ID novel_bna_miR865
Species Brassica napus
Class miRNA
Genome position ChrC4:43756988-43757155 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 21
Mature sequence(if miRNA) 1 - AUUUGGGUUUAGGGUUUACGG - 21
Stem-loop(if miRNA) --   U                   GA                AAAAC            CG  A    G     GU     G U
  GUA ACCCUAAACUCAAAUCUUA  UCCUAAACCCAAAUUA     CCUAAACCUAGA  CU UAGA UUUAA  UUAGA U U
  ||| |||||||||||||||||||  ||||||||||||||||     ||||||||||||  || |||| |||||  ||||| |
  CAU UGGGAUUUGGGUUUAGGAU  AGGAUUUGGGUUUGGU     GGAUUUGGGUUU  GG AUCU GGAUU  AGUUU G A
GG   U                   AC                AUAUA            -A  -    G     UG     G C
Stem-loop sequence GUAUACCCUAAACUCAAAUCUUAGAUCCUAAACCCAAAUUAAAAACCCUAAACCUAGACGCUAUAGAGUUUAAGUUUAGAGUUUACGGUUUGAGUUUAGGGUCUAGGAUUUGGGUUUAGGAUAUAUGGUUUGGGUUUAGGACAUAGGAUUUGGGUUUAGGGUUUACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013798403.1
ncRNA:21   GGC-AUUUGGGAUUUGGGUUUA   1
  =||-|||||||||||||||||*
targets:157   UCGAUAAACCCUAAACCCAAAA   178

3.0 PREDICTED: Brassica napus U3 small nucleolar RNA-associated protein 25-like (LOC106358581), mRNA U3 small nucleolar RNA-associated protein 25-like(LOC106358581) coding protein psRNATarget