ncRNA ID | novel_bna_miR865 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC4:43756988-43757155 [-] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR1363495 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AUUUGGGUUUAGGGUUUACGG - 21 |
Stem-loop(if miRNA) |
--   U                   GA                AAAAC            CG  A    G     GU     G U   GUA ACCCUAAACUCAAAUCUUA  UCCUAAACCCAAAUUA     CCUAAACCUAGA  CU UAGA UUUAA  UUAGA U U   ||| |||||||||||||||||||  ||||||||||||||||     ||||||||||||  || |||| |||||  ||||| |   CAU UGGGAUUUGGGUUUAGGAU  AGGAUUUGGGUUUGGU     GGAUUUGGGUUU  GG AUCU GGAUU  AGUUU G A GG   U                   AC                AUAUA            -A  -    G     UG     G C |
Stem-loop sequence | GUAUACCCUAAACUCAAAUCUUAGAUCCUAAACCCAAAUUAAAAACCCUAAACCUAGACGCUAUAGAGUUUAAGUUUAGAGUUUACGGUUUGAGUUUAGGGUCUAGGAUUUGGGUUUAGGAUAUAUGGUUUGGGUUUAGGACAUAGGAUUUGGGUUUAGGGUUUACGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013798403.1 |
|
3.0 | PREDICTED: Brassica napus U3 small nucleolar RNA-associated protein 25-like (LOC106358581), mRNA | U3 small nucleolar RNA-associated protein 25-like(LOC106358581) | coding protein | psRNATarget |