Search result

BaseInfo

ncRNA ID	novel_bna_miR849
Species	Brassica napus
Class	miRNA
Genome position	ChrC7:1191097-1191230 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537857;SRR538066;SRR538067;SRR538151
Length	20
Mature sequence(if miRNA)	1 - AGGACGAGGUUCUUAGCGGA - 20
Stem-loop(if miRNA)	-A   -CGA                             C           A               C   GGA    GGUUCUUAGCGGAAGUUAAGAAACUGUUU UUAACUUUUAA UAAAAAAGCUAAGAA C   |||    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||   UCU    CCAAGAAUCGCCUUUAAUUCUUUGACAAA AAUUGAAAAUU AUUUUUUCGAUUCUU C AA   CAAC                             A           G               G
Stem-loop sequence	AGGACGAGGUUCUUAGCGGAAGUUAAGAAACUGUUUCUUAACUUUUAAAUAAAAAAGCUAAGAACCCGUUCUUAGCUUUUUUAGUUAAAAGUUAAAAAACAGUUUCUUAAUUUCCGCUAAGAACCCAACUCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013799688.1	ncRNA:20   AGGCGAUUCUUGGAGCAGGA   1   *||||*||||||||||*||| targets:282   GCCGCCAAGAACCUCGCCCU   301 Target Full Sequence	2.5	PREDICTED: Brassica napus cyclin-dependent kinase inhibitor 5 (LOC106360089), mRNA	cyclin-dependent kinase inhibitor 5(LOC106360089)	coding protein	psRNATarget
XM_013840735.1	ncRNA:20   AGGCGAUUCUUGGAGCAGGA   1   *||*=|=||||||||||||| targets:3217   GCCAUUGAGAACCUCGUCCU   3236 Target Full Sequence	3.0	PREDICTED: Brassica napus protein NETWORKED 1D-like (LOC106400363), mRNA	protein NETWORKED 1D-like(LOC106400363)	coding protein	psRNATarget
XM_013863773.1	ncRNA:20   AGGCGAUUCUUGGAGCAGGA   1   *||*=|=||||||||||||| targets:3597   GCCAUUGAGAACCUCGUCCU   3616 Target Full Sequence	3.0	PREDICTED: Brassica napus protein NETWORKED 1D-like (LOC106422990), transcript variant X1, mRNA	protein NETWORKED 1D-like(LOC106422990)	coding protein	psRNATarget
XM_013863774.1	ncRNA:20   AGGCGAUUCUUGGAGCAGGA   1   *||*=|=||||||||||||| targets:3597   GCCAUUGAGAACCUCGUCCU   3616 Target Full Sequence	3.0	PREDICTED: Brassica napus protein NETWORKED 1D-like (LOC106422990), transcript variant X2, mRNA	protein NETWORKED 1D-like(LOC106422990)	coding protein	psRNATarget