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BaseInfo

ncRNA ID	novel_bna_miR843
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:54363707-54363781 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495
Length	24
Mature sequence(if miRNA)	1 - AUACCGACGAAGAACAGACGGAUA - 24
Stem-loop(if miRNA)	---   - UCGGUAUCUCGUCGGAAUAUUCCGACAAAU    UCC G                              A    ||| |                              A    GGC G                              C AUA   A ACAAGAAGCAGCCAUAUCAAUUAAGGCAGC
Stem-loop sequence	UCCGUCGGUAUCUCGUCGGAAUAUUCCGACAAAUAACCGACGGAAUUAACUAUACCGACGAAGAACAGACGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013883194.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *|||*||||**||||||||||||| targets:399   GAUCAGUCUCCUCUUCGUCGGUAU   422 Target Full Sequence	2.0	PREDICTED: Brassica napus RHOMBOID-like protein 3 (LOC106441370), mRNA	RHOMBOID-like protein 3(LOC106441370)	coding protein	psRNATarget
XM_013867059.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *|||*||||**||||||||||||| targets:399   GAUCAGUCUCCUCUUCGUCGGUAU   422 Target Full Sequence	2.0	PREDICTED: Brassica napus RHOMBOID-like protein 3 (LOC106426331), mRNA	RHOMBOID-like protein 3(LOC106426331)	coding protein	psRNATarget
XM_013793985.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:136   AGAAGCUCUGUUCUUCGUCGGUGU   159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106354120 (LOC106354120), mRNA	uncharacterized LOC106354120(LOC106354120)	coding protein	psRNATarget
XM_013790042.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:136   AGAAGCUCUGUUCUUCGUCGGUGU   159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106350107 (LOC106350107), mRNA	uncharacterized LOC106350107(LOC106350107)	coding protein	psRNATarget
XM_013895612.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:136   AGAAGCUCUGUUCUUCGUCGGUGU   159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106453357 (LOC106453357), mRNA	uncharacterized LOC106453357(LOC106453357)	coding protein	psRNATarget
XM_013893338.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:136   AGAAGCUCUGUUCUUCGUCGGUGU   159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106451407 (LOC106451407), mRNA	uncharacterized LOC106451407(LOC106451407)	coding protein	psRNATarget
XM_013876710.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:136   AGAAGCUCUGUUCUUCGUCGGUGU   159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106435782 (LOC106435782), mRNA	uncharacterized LOC106435782(LOC106435782)	coding protein	psRNATarget
XM_013864782.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:136   AGAAGCUCUGUUCUUCGUCGGUGU   159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106424044 (LOC106424044), mRNA	uncharacterized LOC106424044(LOC106424044)	coding protein	psRNATarget
XM_013800650.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:131   AGAAGCUCUGUUCUUCGUCGGUGU   154 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106360964 (LOC106360964), mRNA	uncharacterized LOC106360964(LOC106360964)	coding protein	psRNATarget
XM_013895946.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:131   AGAAGCUCUGUUCUUCGUCGGUGU   154 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106453730 (LOC106453730), mRNA	uncharacterized LOC106453730(LOC106453730)	coding protein	psRNATarget
XM_013799365.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:88   AGAAGCUCUGUUCUUCGUCGGUGU   111 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106359716 (LOC106359716), transcript variant X1, mRNA	uncharacterized LOC106359716(LOC106359716)	coding protein	psRNATarget
XM_013859841.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   ******||||||||||||||||=| targets:38   AUAAGCUCUGUUCUUCGUCGGUGU   61 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106419080 (LOC106419080), mRNA	uncharacterized LOC106419080(LOC106419080)	coding protein	psRNATarget
XM_013802657.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:131   AGAAGCUCUGUUCUUCGUCGGUGU   154 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106362815 (LOC106362815), mRNA	uncharacterized LOC106362815(LOC106362815)	coding protein	psRNATarget
XM_013890352.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=****||||||||||||||||=| targets:131   AGAAGCUCUGUUCUUCGUCGGUGU   154 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106448471 (LOC106448471), mRNA	uncharacterized LOC106448471(LOC106448471)	coding protein	psRNATarget
XM_013826847.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=***||*||||||||||=||||| targets:176   AGCGGGUAUGUUCUUCGUUGGUAU   199 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106387026 (LOC106387026), mRNA	uncharacterized LOC106387026(BNAA10G17140D)	coding protein	psRNATarget
XM_013866887.1	ncRNA:24   AUAGGCAGACAAGAAGCAGCCAUA   1   *=***||*||||||||||=||||| targets:176   AGCGGGUAUGUUCUUCGUUGGUAU   199 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106426179 (LOC106426179), mRNA	uncharacterized LOC106426179(LOC106426179)	coding protein	psRNATarget