Search result

BaseInfo

ncRNA ID	novel_bna_miR829
Species	Brassica napus
Class	miRNA
Genome position	ChrC3:47766656-47766707 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537857
Length	21
Mature sequence(if miRNA)	1 - UGCGGCUAAGAAACGAACACG - 21
Stem-loop(if miRNA)	--C    AA           ----   C    GUUU  UUUUUGGCCGC    UGC G    ||||  |||||||||||    |||    CAAG  AAGAAUCGGCG    GCG C GCA    CA           UUCU   U
Stem-loop sequence	CGUUUAAUUUUUGGCCGCUGCCGCUGCGUCUUGCGGCUAAGAAACGAACACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013816092.1	ncRNA:21   GCACAAGCAAAGAAUCGGCGU   1   ||||||||||||||||||||| targets:334   CGUGUUCGUUUCUUAGCCGCA   354 Target Full Sequence	0.0	PREDICTED: Brassica napus uncharacterized LOC106376048 (LOC106376048), mRNA	uncharacterized LOC106376048(LOC106376048)	coding protein	psRNATarget
XM_013873453.1	ncRNA:21   GCACAAGCAAAGAAUCGGCGU   1   **|||||||||||*||||||| targets:2187   GUUGUUCGUUUCUGAGCCGCA   2207 Target Full Sequence	1.5	PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC106432610), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC106432610)	coding protein	psRNATarget
XM_013873455.1	ncRNA:21   GCACAAGCAAAGAAUCGGCGU   1   **|||||||||||*||||||| targets:1441   GUUGUUCGUUUCUGAGCCGCA   1461 Target Full Sequence	1.5	PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC106432610), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC106432610)	coding protein	psRNATarget