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BaseInfo

ncRNA ID novel_bna_miR823
Species Brassica napus
Class miRNA
Genome position ChrC2:45283026-45283086 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537857
Length 22
Mature sequence(if miRNA) 40 - AUCUUGAUUUUACGGAUUCGGC - 61
Stem-loop(if miRNA) --    -U       CGG      CGGAUCC
  AUCU  GAUUUUA   AUUCGG       A
  ||||  |||||||   ||||||       G
  UGGA  UUAAAGU   UAAGCC       A
CC    UU       -AA      UAAAUAU
Stem-loop sequence AUCUUGAUUUUACGGAUUCGGCGGAUCCAGAUAUAAAUCCGAAUAAUGAAAUUUUAGGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013817336.1
ncRNA:22   CGGCUUAGGCAUUUUAGUUCUA   1
  *==|||||||||||||*|||||
targets:422   UUUGAAUCCGUAAAAUGAAGAU   443

1.5 PREDICTED: Brassica napus 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like (LOC106377158), mRNA 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like(LOC106377158) coding protein psRNATarget