Search result

BaseInfo

ncRNA ID ath-miRf10627-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - AUUGUUGUCCGAGUCGUCAU - NA
Stem-loop(if miRNA)     U               C           G   UA
AAGA GCAAAAUGACGACUC GACAACAAUAA UAU  G
|||| ||||||||||||||| ||||||||||| |||  U
UUCU CGUUUUACUGCUGAG CUGUUGUUAUU AUG  U
    U               C           -   UU
Stem-loop sequence AAGAUGCAAAAUGACGACUCCGACAACAAUAAGUAUUAGUUUUGUAUUAUUGUUGUCCGAGUCGUCAUUUUGCUUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
Z50752.1
ncRNA:20   UACUGCUGAGCCUGUUGUUA   1
  ||||=||||||||||||=||
targets:1136   AUGAUGACUCGGACAACGAU   1155

2.5 A.thaliana mRNA for sugar transporter NA coding protein psRNATarget
NM_001332471.1
ncRNA:20   UACUGCUGAGCCUGUUGUUA   1
  ||||=||||||||||||=||
targets:1387   AUGAUGACUCGGACAACGAU   1406

2.5 Arabidopsis thaliana tonoplast monosaccharide transporter1 (TMT1), mRNA tonoplast monosaccharide transporter1(TMT1) coding protein psRNATarget
NM_101937.6
ncRNA:20   UACUGCUGAGCCUGUUGUUA   1
  ||||=||||||||||||=||
targets:1577   AUGAUGACUCGGACAACGAU   1596

2.5 Arabidopsis thaliana tonoplast monosaccharide transporter1 (TMT1), mRNA tonoplast monosaccharide transporter1(TMT1) coding protein psRNATarget