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BaseInfo

ncRNA ID novel_bna_miR813
Species Brassica napus
Class miRNA
Genome position ChrA9:28768757-28768848 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537857;SRR538066;SRR538067;SRR538225
Length 20
Mature sequence(if miRNA) 1 - AGGGAUAGUUGGGAAUGUGG - 20
Stem-loop(if miRNA) --AGG       G       GGC     AGAUAC       AUCAGAAA
     GAUAGUU GGAAUGU   CGUAU      AAGAGUU        A
     ||||||| |||||||   |||||      |||||||        A
     UUAUCGA UUUUGUA   GUAUA      UUCUCAA        A
GAAAA       G       ---     ----GA       AAAAAAAA
Stem-loop sequence AGGGAUAGUUGGGAAUGUGGCCGUAUAGAUACAAGAGUUAUCAGAAAAAAAAAAAAAAAACUCUUAGAUAUGAUGUUUUGAGCUAUUAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013846207.1
ncRNA:20   GGUGUAAGGGUUGAUAGGGA   1
  |||||||||||||||||||*
targets:1078   CCACAUUCCCAACUAUCCCC   1097

1.0 PREDICTED: Brassica napus protein TRANSPARENT TESTA 12-like (LOC106405685), transcript variant X1, mRNA protein TRANSPARENT TESTA 12-like(LOC106405685) coding protein psRNATarget
XM_013846208.1
ncRNA:20   GGUGUAAGGGUUGAUAGGGA   1
  |||||||||||||||||||*
targets:1068   CCACAUUCCCAACUAUCCCC   1087

1.0 PREDICTED: Brassica napus protein TRANSPARENT TESTA 12-like (LOC106405685), transcript variant X2, mRNA protein TRANSPARENT TESTA 12-like(LOC106405685) coding protein psRNATarget
XM_013846209.1
ncRNA:20   GGUGUAAGGGUUGAUAGGGA   1
  |||||||||||||||||||*
targets:1079   CCACAUUCCCAACUAUCCCC   1098

1.0 PREDICTED: Brassica napus protein TRANSPARENT TESTA 12-like (LOC106405685), transcript variant X3, mRNA protein TRANSPARENT TESTA 12-like(LOC106405685) coding protein psRNATarget
XM_013846212.1
ncRNA:20   GGUGUAAGGGUUGAUAGGGA   1
  |||||||||||||||||||*
targets:1079   CCACAUUCCCAACUAUCCCC   1098

1.0 PREDICTED: Brassica napus protein TRANSPARENT TESTA 12-like (LOC106405685), transcript variant X6, mRNA protein TRANSPARENT TESTA 12-like(LOC106405685) coding protein psRNATarget
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