Search result

BaseInfo

ncRNA ID novel_bna_miR802
Species Brassica napus
Class miRNA
Genome position ChrA3:21652006-21652058 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537657
Length 25
Mature sequence(if miRNA) 1 - UGGAUUUAAUAUCCGGAUCCGGAUC - 25
Stem-loop(if miRNA) --              --        A
  UGGAUUUAAUAUCC  GGAUCCGG U
  ||||||||||||||  |||||||| C
  ACCUAAAUUAUAGG  CCUAGGCU C
GC              UG        G
Stem-loop sequence UGGAUUUAAUAUCCGGAUCCGGAUCCGUCGGAUCCGUGGAUAUUAAAUCCACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013790755.1
ncRNA:25   CUAGGCCUAGGCCUAUAAUUUAGGU   1
  *|||=||||=|||||||||||||||
targets:99   AAUCUGGAUUCGGAUAUUAAAUCCA   123

1.0 PREDICTED: Brassica napus allene oxide cyclase 2, chloroplastic-like (LOC106350926), mRNA allene oxide cyclase 2, chloroplastic-like(LOC106350926) coding protein psRNATarget