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BaseInfo

ncRNA ID	ath-miR774b-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:22150128-22150266 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	97 - CAUCCAUAUUUUCAUCUCGAA - 117
Stem-loop(if miRNA)	GAGU   GAUUAUAU     -C                       -------------  AUCAAUGCUUACGAUU     GUU        GGAUU  AUUUGAGAUGAAGAUAUGGGUGA             UG                U     |||        |||||  |||||||||||||||||||||||             ||     CGA        UCUAA  UAAGCUCUACUUUUAUACCUACU             AC                U UUUG   -AAAAAUU     UU                       UUUUCUUAAUUUA  GAUUGUAUUUAACUGG
Stem-loop sequence	GAGUGUUGAUUAUAUGGAUUCAUUUGAGAUGAAGAUAUGGGUGAUGAUCAAUGCUUACGAUUUUGGUCAAUUUAUGUUAGCAAUUUAAUUCUUUUUCAUCCAUAUUUUCAUCUCGAAUUUAAUCUUUAAAAAAGCGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT020589.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   *||*|||||||=||||||||| targets:722   AUCCAGAUGAAGAUAUGGAUG   742 Target Full Sequence	2.5	Arabidopsis thaliana At2g41500 gene, complete cds	NA	coding protein	psRNATarget
NM_001336916.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   *||*|||||||=||||||||| targets:902   AUCCAGAUGAAGAUAUGGAUG   922 Target Full Sequence	2.5	Arabidopsis thaliana WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein (LIS), partial mRNA	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein(LIS)	coding protein	psRNATarget
BX820736.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   *||*|||||||=||||||||| targets:870   AUCCAGAUGAAGAUAUGGAUG   890 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH64ZH10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_129713.3	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   *||*|||||||=||||||||| targets:883   AUCCAGAUGAAGAUAUGGAUG   903 Target Full Sequence	2.5	Arabidopsis thaliana WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein (LIS), mRNA	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein(LIS)	coding protein	psRNATarget
AK229530.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   *||*|||||||=||||||||| targets:883   AUCCAGAUGAAGAUAUGGAUG   903 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative U4/U6 small nuclear ribonucleoprotein, complete cds, clone: RAFL17-34-N02	NA	coding protein	psRNATarget
BT008700.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   *||*|||||||=||||||||| targets:883   AUCCAGAUGAAGAUAUGGAUG   903 Target Full Sequence	2.5	Arabidopsis thaliana clone RAFL17-34-N02 (R50398) putative small nuclear ribonucleoprotein Prp4p (At2g41500) mRNA, complete cds	NA	coding protein	psRNATarget
AY085516.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   ||||||**||||||||||||* targets:114   UUCGAGUGGAAAAUAUGGAUC   134 Target Full Sequence	3.0	Arabidopsis thaliana clone 155315 mRNA, complete sequence	NA	coding protein	psRNATarget
AY078050.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:1922   UUCUACAUGAAAAUAUGGAUU   1942 Target Full Sequence	3.0	Arabidopsis thaliana AT5g18830/F17K4_80 mRNA, complete cds	NA	coding protein	psRNATarget
AJ011612.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:1978   UUCUACAUGAAAAUAUGGAUU   1998 Target Full Sequence	3.0	Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 7	NA	coding protein	psRNATarget
NM_001203404.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:2084   UUCUACAUGAAAAUAUGGAUU   2104 Target Full Sequence	3.0	Arabidopsis thaliana squamosa promoter binding protein-like 7 (SPL7), mRNA	squamosa promoter binding protein-like 7(SPL7)	coding protein	psRNATarget
AF367355.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:2020   UUCUACAUGAAAAUAUGGAUU   2040 Target Full Sequence	3.0	Arabidopsis thaliana AT5g18830/F17K4_80 mRNA, complete cds	NA	coding protein	psRNATarget
BX831047.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:2034   UUCUACAUGAAAAUAUGGAUU   2054 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_180519.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:2052   UUCUACAUGAAAAUAUGGAUU   2072 Target Full Sequence	3.0	Arabidopsis thaliana squamosa promoter binding protein-like 7 (SPL7), mRNA	squamosa promoter binding protein-like 7(SPL7)	coding protein	psRNATarget
AY063815.1	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:2052   UUCUACAUGAAAAUAUGGAUU   2072 Target Full Sequence	3.0	Arabidopsis thaliana putative squamosa promoter binding protein 7 (At5g18830) mRNA, complete cds	NA	coding protein	psRNATarget
NM_121888.3	ncRNA:21   AAGCUCUACUUUUAUACCUAC   1   |||*|*||||||||||||||* targets:2179   UUCUACAUGAAAAUAUGGAUU   2199 Target Full Sequence	3.0	Arabidopsis thaliana squamosa promoter binding protein-like 7 (SPL7), mRNA	squamosa promoter binding protein-like 7(SPL7)	coding protein	psRNATarget

Reference

1	PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"; Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC; Plant Cell. 22:1074-1089(2010).