Search result

BaseInfo

ncRNA ID	novel_bna_miR788
Species	Brassica napus
Class	miRNA
Genome position	ChrC3:11874661-11874735 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495;SRR1363496;SRR2015555
Length	21
Mature sequence(if miRNA)	1 - UUCGCAGGAGAGAUAGCGCCA - 21
Stem-loop(if miRNA)	--UU  C          G  C      -   UU    G     CG AGGAGAGAUA CG CAUCAC AUU  CUAA A     || |||||||||| || |||||| |||  ||||     GC UCCUCUUUAU GC GUAGUG UAG  GAUU G CGAU  A          G  A      G   UC    U
Stem-loop sequence	UUCGCAGGAGAGAUAGCGCCAUCACAUUUUCUAAGAGUUUAGCUGAUGGUGAUGACGGUAUUUCUCCUACGUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013809761.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||||=|*||||||||||||| targets:103   UGGCGUUUUCUCUCCUGCGAA   123 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-transporting ATPase 8, plasma membrane-type-like (LOC106369635), mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC106369635)	coding protein	psRNATarget
XM_013859302.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||||=|*||||||||||||| targets:97   UGGCGUUUUCUCUCCUGCGAA   117 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-transporting ATPase 8, plasma membrane-type-like (LOC106418574), transcript variant X3, mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC106418574)	coding protein	psRNATarget
XM_013859300.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||||=|*||||||||||||| targets:97   UGGCGUUUUCUCUCCUGCGAA   117 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-transporting ATPase 8, plasma membrane-type-like (LOC106418574), transcript variant X1, mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC106418574)	coding protein	psRNATarget
XM_013859301.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||||=|*||||||||||||| targets:97   UGGCGUUUUCUCUCCUGCGAA   117 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-transporting ATPase 8, plasma membrane-type-like (LOC106418574), transcript variant X2, mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC106418574)	coding protein	psRNATarget
XM_013882795.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=|=||||||||||||||* targets:253   UGGUGUUAUCUCUCCUGCGAC   273 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106441015), transcript variant X1, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106441015)	coding protein	psRNATarget
XM_013882796.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=|=||||||||||||||* targets:332   UGGUGUUAUCUCUCCUGCGAC   352 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106441015), transcript variant X2, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106441015)	coding protein	psRNATarget
XM_013795536.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||*|||||||||||||* targets:215   UGGUGCCAUCUCUCCUGCGAU   235 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106355621), mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106355621)	coding protein	psRNATarget
XM_013828467.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||*|||||||||||||* targets:33   UGGUGCCAUCUCUCCUGCGAU   53 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106388320), transcript variant X2, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106388320)	coding protein	psRNATarget
XM_013859045.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||*|||||||||||||* targets:184   UGGUGCCAUCUCUCCUGCGAU   204 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106418353), transcript variant X2, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106418353)	coding protein	psRNATarget
XM_013859044.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||*|||||||||||||* targets:222   UGGUGCCAUCUCUCCUGCGAU   242 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106418353), transcript variant X1, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106418353)	coding protein	psRNATarget
XM_013828399.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||*|||||||||||||* targets:33   UGGUGCCAUCUCUCCUGCGAU   53 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106388320), transcript variant X1, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106388320)	coding protein	psRNATarget
XM_013859046.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||*|||||||||||||* targets:222   UGGUGCCAUCUCUCCUGCGAU   242 Target Full Sequence	3.0	PREDICTED: Brassica napus calcium-transporting ATPase 10, plasma membrane-type-like (LOC106418353), transcript variant X3, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC106418353)	coding protein	psRNATarget