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BaseInfo

ncRNA ID novel_bna_miR735
Species Brassica napus
Class miRNA
Genome position ChrA9:17564439-17564535 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537657
Length 21
Mature sequence(if miRNA) 77 - UCAUUGAGUGCAGCGUUGAUG - 97
Stem-loop(if miRNA) --UC                ------A        CC     --   U   UA
    AUUGAGUGCAGCGUUG       UGUAAAUU  GUUUU  UCU UUC  C
    ||||||||||||||||       ||||||||  |||||  ||| |||  C
    UAACUCGCGUUGCGAC       AUAUUUAA  CAAAA  AGG AAG  G
GUAU                CAUAACC        --     UU   U   UU
Stem-loop sequence UCAUUGAGUGCAGCGUUGAUGUAAAUUCCGUUUUUCUUUUCUACCGUUGAAUGGAUUAAAACAAUUUAUACCAAUACCAGCGUUGCGCUCAAUUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013787011.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *||||||||||||||=|||||
targets:748   AAUCAACGCUGCACUUAAUGA   768

1.5 PREDICTED: Brassica napus laccase-17-like (LOC106347478), mRNA laccase-17-like(LOC106347478) coding protein psRNATarget
XM_013825662.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *||||||||||||||=|||||
targets:788   AAUCAACGCUGCACUUAAUGA   808

1.5 PREDICTED: Brassica napus laccase-17-like (LOC106385758), transcript variant X1, mRNA laccase-17-like(LOC106385758) coding protein psRNATarget
XM_013825669.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *||||||||||||||=|||||
targets:788   AAUCAACGCUGCACUUAAUGA   808

1.5 PREDICTED: Brassica napus laccase-17-like (LOC106385758), transcript variant X2, mRNA laccase-17-like(LOC106385758) coding protein psRNATarget
XM_013865948.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  |||||||||||||||*|||||
targets:761   CAUCAACGCUGCACUAAAUGA   781

1.5 PREDICTED: Brassica napus laccase-11 (LOC106425230), mRNA laccase-11(LOC106425230) coding protein psRNATarget
XM_013800205.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  |||||||||||||||*|||||
targets:766   CAUCAACGCUGCACUAAAUGA   786

1.5 PREDICTED: Brassica napus laccase-11-like (LOC106360585), mRNA laccase-11-like(LOC106360585) coding protein psRNATarget
XM_013864690.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  |||||||||||||||*|||||
targets:781   CAUCAACGCUGCACUAAAUGA   801

1.5 PREDICTED: Brassica napus laccase-11-like (LOC106423947), mRNA laccase-11-like(LOC106423947) coding protein psRNATarget
XM_013873443.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=|||||||||=||||
targets:147   GAUCAAUGCUGCACUCGAUGA   167

2.5 PREDICTED: Brassica napus laccase-2-like (LOC106432597), mRNA laccase-2-like(LOC106432597) coding protein psRNATarget
XM_013847410.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=|||||||||=||||
targets:786   GAUCAAUGCUGCACUCGAUGA   806

2.5 PREDICTED: Brassica napus laccase-2 (LOC106406699), transcript variant X2, mRNA laccase-2(LOC106406699) coding protein psRNATarget
XM_013847409.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=|||||||||=||||
targets:813   GAUCAAUGCUGCACUCGAUGA   833

2.5 PREDICTED: Brassica napus laccase-2 (LOC106406699), transcript variant X1, mRNA laccase-2(LOC106406699) coding protein psRNATarget
XM_013889632.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||||||||=|||||
targets:727   AGUCAAUGCUGCACUUAAUGA   747

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106447656), mRNA laccase-4-like(LOC106447656) coding protein psRNATarget
XM_013843602.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||||||||=|||||
targets:709   AGUCAAUGCUGCACUUAAUGA   729

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106402805), mRNA laccase-4-like(LOC106402805) coding protein psRNATarget
XM_013892922.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||||||||=|||||
targets:722   AGUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Brassica napus laccase-4 (LOC106451063), mRNA laccase-4(LOC106451063) coding protein psRNATarget
XM_013892923.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||||||||=|||||
targets:722   AGUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Brassica napus laccase-4 (LOC106451064), mRNA laccase-4(LOC106451064) coding protein psRNATarget
XM_013892921.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||||||||=|||||
targets:722   AGUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106451062), mRNA laccase-4-like(LOC106451062) coding protein psRNATarget
XM_013794782.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||||||||=|||||
targets:825   AGUCAAUGCUGCACUUAAUGA   845

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106354757), mRNA laccase-4-like(LOC106354757) coding protein psRNATarget
XM_013856926.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||||||||||||||*|*
targets:570   GGUCAACGCUGCACUCAAAGC   590

2.5 PREDICTED: Brassica napus pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 (LOC106416093), mRNA pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1(LOC106416093) coding protein psRNATarget
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