Search result

BaseInfo

ncRNA ID novel_bna_miR729
Species Brassica napus
Class miRNA
Genome position ChrA8:7028257-7028389 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537657;SRR538066
Length 21
Mature sequence(if miRNA) 1 - AACGGAAUAUAAGAACCUGAC - 21
Stem-loop(if miRNA) --AA                 A               U         -       AG        UA
    CGGAAUAUAAGAACCUG CUCUUAAUUUUUAAC AAAAAAAGU AAGAACC  CUCUUAAA  A
    ||||||||||||||||| ||||||||||||||| ||||||||| |||||||  ||||||||  G
    GCCUUAUAUUCUUGGGC GAGAAUUGAAAAUUG UUUUUUUCA UUCUUGG  GAGAAUUU  A
AAUC                 A               -         A       CA        UG
Stem-loop sequence AACGGAAUAUAAGAACCUGACUCUUAAUUUUUAACUAAAAAAAGUAAGAACCAGCUCUUAAAUAAGAGUUUUAAGAGACGGUUCUUAACUUUUUUUGUUAAAAGUUAAGAGACGGGUUCUUAUAUUCCGCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013824599.1
ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1
  *|||||||||||||*|||||*
targets:776   AUCAGGUUCUUAUACUCCGUC   796

2.5 PREDICTED: Brassica napus probable WRKY transcription factor 38 (LOC106384659), mRNA probable WRKY transcription factor 38(LOC106384659) coding protein psRNATarget
XM_013830747.1
ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1
  |*|=|||||||||||||||*|
targets:24   GACGGGUUCUUAUAUUCCGAU   44

2.5 PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X1, mRNA CBS domain-containing protein CBSCBSPB2-like(LOC106390313) coding protein psRNATarget
XM_013830748.1
ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1
  |*|=|||||||||||||||*|
targets:24   GACGGGUUCUUAUAUUCCGAU   44

2.5 PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X2, mRNA CBS domain-containing protein CBSCBSPB2-like(LOC106390313) coding protein psRNATarget
XM_013807200.1
ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1
  **|||*|||||||||||*|||
targets:1455   CACAGUUUCUUAUAUUCGGUU   1475

2.5 PREDICTED: Brassica napus protein NRT1/ PTR FAMILY 4.4-like (LOC106367429), mRNA protein NRT1/ PTR FAMILY 4.4-like(LOC106367429) coding protein psRNATarget
XM_013861900.1
ncRNA:21   CAGUCCAAGAAUAUAAGGCAA   1
  **|||*|||||||||||*|||
targets:1455   CACAGUUUCUUAUAUUCGGUU   1475

2.5 PREDICTED: Brassica napus protein NRT1/ PTR FAMILY 4.4 (LOC106421047), mRNA protein NRT1/ PTR FAMILY 4.4(LOC106421047) coding protein psRNATarget