Search result

BaseInfo

ncRNA ID	novel_bna_miR728
Species	Brassica napus
Class	miRNA
Genome position	ChrA8:2110292-2110421 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537657
Length	20
Mature sequence(if miRNA)	1 - UUCUUGGACAAGAGAUUCGG - 20
Stem-loop(if miRNA)	--       G  GA        CG   --G GA   --GAG      G  CAAC     -   GGAUAG   GAGUUUC UG  CAGGAGAU  GUG   G  CAU     AUACGU GA    AACUC UGU      C   ||||||| ||  ||||||||  |||   |  |||     |||||| ||    ||||| |||      A   CUUAGAG AC  GUUCUUUG  UAC   U  GUA     UGUGUA CU    UUGAG ACA      A GG       A  AG        AA   AGG AG   GAAGA      G  ----     U   ACAACA
Stem-loop sequence	GAGUUUCGUGGACAGGAGAUCGGUGGGGACAUGAGAUACGUGGACAACAACUCUGUGGAUAGCAAACAACAACAUGAGUUUCGAUGUGUAGAAGAUGGAUGGACAUAAGUUUCUUGGACAAGAGAUUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013849402.1	ncRNA:20   GGCUUAGAGAACAGGUUCUU   1   |||||*|||||||||||||| targets:1082   CCGAACCUCUUGUCCAAGAA   1101 Target Full Sequence	1.0	PREDICTED: Brassica napus solute carrier family 40 member 1-like (LOC106408678), partial mRNA	solute carrier family 40 member 1-like(LOC106408678)	coding protein	psRNATarget
XM_013865513.1	ncRNA:20   GGCUUAGAGAACAGGUUCUU   1   =|||*|||||*||||||||| targets:331   UCGAUUCUCUCGUCCAAGAA   350 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106424768 (LOC106424768), transcript variant X3, mRNA	uncharacterized LOC106424768(BNAC05G51730D)	coding protein	psRNATarget
XM_013865512.1	ncRNA:20   GGCUUAGAGAACAGGUUCUU   1   =|||*|||||*||||||||| targets:405   UCGAUUCUCUCGUCCAAGAA   424 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106424768 (LOC106424768), transcript variant X2, mRNA	uncharacterized LOC106424768(BNAC05G51730D)	coding protein	psRNATarget
XM_013865511.1	ncRNA:20   GGCUUAGAGAACAGGUUCUU   1   =|||*|||||*||||||||| targets:732   UCGAUUCUCUCGUCCAAGAA   751 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106424768 (LOC106424768), transcript variant X1, mRNA	uncharacterized LOC106424768(BNAC05G51730D)	coding protein	psRNATarget
XM_013893742.1	ncRNA:20   GGCUUAGAGAACAGGUUCUU   1   =|||*|||||*||||||||| targets:790   UCGAUUCUCUCGUCCAAGAA   809 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106451764 (LOC106451764), mRNA	uncharacterized LOC106451764(LOC106451764)	coding protein	psRNATarget