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BaseInfo

ncRNA ID novel_bna_miR709
Species Brassica napus
Class miRNA
Genome position ChrA4:3733754-3733846 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537657
Length 19
Mature sequence(if miRNA) 1 - UAGUAGAAAACGAACAAGA - 19
Stem-loop(if miRNA) --UC      C                  ---GAGAAGAA   GC  U
    GUUCGU UUCUACUAUCAUAUUAUG           GAU  CA A
    |||||| ||||||||||||||||||           |||  ||
    CAAGCA AAGAUGAUAGUAUAAUAC           CUA  GU U
AGAA      A                  AAGAUGUAAAA   GU  A
Stem-loop sequence UCGUUCGUCUUCUACUAUCAUAUUAUGGAGAAGAAGAUGCCAUAUAUGUGAUCAAAAUGUAGAACAUAAUAUGAUAGUAGAAAACGAACAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013785367.1
ncRNA:19   AGAACAAGCAAAAGAUGAU   1
  |=|||*|||||||||||||
targets:295   UUUUGGUCGUUUUCUACUA   313

2.0 PREDICTED: Brassica napus uncharacterized LOC106346113 (LOC106346113), mRNA uncharacterized LOC106346113(LOC106346113) coding protein psRNATarget
XM_013840565.1
ncRNA:19   AGAACAAGCAAAAGAUGAU   1
  ||||*||||||||||*|||
targets:24   UCUUCUUCGUUUUCUCCUA   42

2.5 PREDICTED: Brassica napus truncated transcription factor CAULIFLOWER A-like (LOC106400171), mRNA truncated transcription factor CAULIFLOWER A-like(LOC106400171) coding protein psRNATarget