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BaseInfo

ncRNA ID	ath-miRf10616-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CACUCGACCAGGGGGUCGAGU - NA
Stem-loop(if miRNA)	AAG        A   --G   AGA AUACUCGACCU   GGUCGAGU GAU   GGA   A |||||||||||   |||||||| |||   ||| UAUGAGCUGGG   CCAGCUCA CUG   CCU   U            GGA        -   AAA   CGG
Stem-loop sequence	AUACUCGACCUAAGGGUCGAGUAGAUGGGAAGAAUGGCUCCAAAGUCACUCGACCAGGGGGUCGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT025674.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:310   ACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	1.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:92   ACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	1.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:183   ACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:232   ACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:183   ACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:232   ACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:126   ACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:501   ACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:501   ACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||||||||||||* targets:1573   ACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   |||||||||||*||||||||| targets:138   ACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   |||||||||||*||||||||| targets:138   ACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||*|||||||||| targets:1211   ACUCGACCCCGUGGUCGAGUG   1231 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||*|||||||||||||||* targets:303   ACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||*|||||||||||||||* targets:303   ACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||*|||||||||||||||||* targets:585   ACYCGACCCCCUGGUCGAGUA   605 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   |||=||||||||||||*|||| targets:144   ACUUGACCCCCUGGUCUAGUG   164 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   |||||||||||*||||||||* targets:189   ACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||*|||||||||* targets:491   ACUCGACCCCGUGGUCGAGUA   511 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   ||||||||||*|||||||||* targets:537   ACUCGACCCCAUGGUCGAGUA   557 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UGAGCUGGGGGACCAGCUCAC   1   |||||||||||*||||||||* targets:1106   ACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget