ncRNA ID | novel_bna_miR702 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA4:19588132-19588328 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537657 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AUGAUUAUCCACGGUUUCUUAGG - 23 |
Stem-loop(if miRNA) |
--  G              C      C                                                           C     C     C   AU AUUAUCCACGGUUU UUAGGG GGGGUUCUUAGGAAAAUAUAAGAAACUGUUUCUUAGUUUUCAACUAAAAAGUUAAGAAA UGUUU UUAAA U   || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||   UA UAAUAGGUGCCAAA AAUCCC CCUCAAGAAUCUUUUUAUAUUCUUUGACAAAGGAUUAAAAGUUGAUUUUUCAAUUCUUU ACAAA AAUUU A GG  G              A      A                                                           A     -     C |
Stem-loop sequence | AUGAUUAUCCACGGUUUCUUAGGGCGGGGUUCUUAGGAAAAUAUAAGAAACUGUUUCUUAGUUUUCAACUAAAAAGUUAAGAAACUGUUUCUUAAACUACUUUAAAAACAAUUUCUUAACUUUUUAGUUGAAAAUUAGGAAACAGUUUCUUAUAUUUUUCUAAGAACUCCACCCUAAAAAACCGUGGAUAAUGAUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013874201.1 |
|
2.0 | PREDICTED: Brassica napus uncharacterized LOC106433362 (LOC106433362), mRNA | uncharacterized LOC106433362(LOC106433362) | coding protein | psRNATarget | |||||||||
XM_013874228.1 |
|
2.0 | PREDICTED: Brassica napus uncharacterized LOC106433400 (LOC106433400), mRNA | uncharacterized LOC106433400(LOC106433400) | coding protein | psRNATarget |