Search result

BaseInfo

ncRNA ID ath-miR774b-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:22150128-22150266 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 25 - UGAGAUGAAGAUAUGGGUGAU - 45
Stem-loop(if miRNA) GAGU   GAUUAUAU     -C                       -------------  AUCAAUGCUUACGAUU
    GUU        GGAUU  AUUUGAGAUGAAGAUAUGGGUGA             UG                U
    |||        |||||  |||||||||||||||||||||||             ||
    CGA        UCUAA  UAAGCUCUACUUUUAUACCUACU             AC                U
UUUG   -AAAAAUU     UU                       UUUUCUUAAUUUA  GAUUGUAUUUAACUGG
Stem-loop sequence GAGUGUUGAUUAUAUGGAUUCAUUUGAGAUGAAGAUAUGGGUGAUGAUCAAUGCUUACGAUUUUGGUCAAUUUAUGUUAGCAAUUUAAUUCUUUUUCAUCCAUAUUUUCAUCUCGAAUUUAAUCUUUAAAAAAGCGUUU

Reference

1 PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
Plant Cell. 22:1074-1089(2010).