ncRNA ID | ahy-miR3508 |
Species | Arachis hypogaea |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - UAGAGGGUCCCCAUGUUCUCA - NA |
Stem-loop(if miRNA) |
AGGCAAA    --   UAUCUU        CA  C  A           C    C   A -      CUCGUAA     U        AUUC  UCC      UGAGGACA  GG GA UCCUCUAUUCU UCUU UGC C UGCCGC       AUCAC A        ||||  |||      ||||||||  || || ||||||||||| |||| ||| | ||||||       |||||        UGAG  AGG      ACUCUUGU  CC CU GGGAGAUAAGA AGAA ACG G GUGGUG       UAGUG C --CAUUN    UC   UUNAAU        AC  -  -           -    -   A U      -------     U |
Stem-loop sequence | AGGCAAAAUUCUCCUAUCUUUGAGGACACAGGCGAAUCCUCUAUUCUCUCUUCUGCACUGCCGCCUCGUAAAUCACUACUGUGAUGUGGUGUGAGCAAAGAAGAAUAGAGGGUCCCCAUGUUCUCAUAANUUGGACUGAGUNUUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JR577397.1 |
|
2.5 | TSA: Arachis hypogaea Ahy.Unigene40434 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
GAER01034602.1 |
|
2.5 | TSA: Arachis hypogaea Unigene34625 mRNA sequence | NA | coding protein | psRNATarget |
1 | PMID:20047695
"Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"; Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ; BMC Plant Biol. 10:3(2010). |