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BaseInfo

ncRNA ID	novel_bna_miR684
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:8360107-8360319 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537633
Length	22
Mature sequence(if miRNA)	192 - AAGAGCAUGAUUAACCCGGAGU - 213
Stem-loop(if miRNA)	--A   G              A        GA  AU   C  A                                                             UA    AGA CAUGAUUAACCCGG GUUCUUAG  UG  GUU UU GCGGAAGUUAAGAAACUGUUUCUUAAUUUUUAACUAAAAAAGCUAAGAACUGGUUCUUAAA  A    ||| |||||||||||||| ||||||||  ||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  G    UCU GUACUAAUUGGGCC CAAGAAUC  AU  CAA AA CGCCUUCAAUUCUUUGACAAAGAAUUGAAAAUUGAUUUUUUCGAUUCUUGACCAAGAAUUU  G CUA   G              C        UC  CU   A  A                                                             CA
Stem-loop sequence	AAGAGCAUGAUUAACCCGGAGUUCUUAGGAUGAUGUUCUUAGCGGAAGUUAAGAAACUGUUUCUUAAUUUUUAACUAAAAAAGCUAAGAACUGGUUCUUAAAUAAGGACUUUAAGAACCAGUUCUUAGCUUUUUUAGUUAAAAGUUAAGAAACAGUUUCUUAACUUCCGCAAAAAACUCUACUCUAAGAACCCCGGGUUAAUCAUGGUCUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013812492.1	ncRNA:19   GGCCCAAUUAGUACGAGAA   1   ||||||||||||||*|||| targets:1   CCGGGUUAAUCAUGGUCUU   19 Target Full Sequence	1.5	PREDICTED: Brassica napus putative uncharacterized protein DDB_G0289963 (LOC106372309), transcript variant X5, mRNA	putative uncharacterized protein DDB_G0289963(LOC106372309)	coding protein	psRNATarget
XM_013812490.1	ncRNA:19   GGCCCAAUUAGUACGAGAA   1   ||||||||||||||*|||| targets:1   CCGGGUUAAUCAUGGUCUU   19 Target Full Sequence	1.5	PREDICTED: Brassica napus putative uncharacterized protein DDB_G0289963 (LOC106372309), transcript variant X3, mRNA	putative uncharacterized protein DDB_G0289963(LOC106372309)	coding protein	psRNATarget
XM_013812489.1	ncRNA:20   AGGCCCAAUUAGUACGAGAA   1   *||||||||||||||*|||| targets:1   CCCGGGUUAAUCAUGGUCUU   20 Target Full Sequence	1.5	PREDICTED: Brassica napus putative uncharacterized protein DDB_G0289963 (LOC106372309), transcript variant X2, mRNA	putative uncharacterized protein DDB_G0289963(LOC106372309)	coding protein	psRNATarget
XM_013812488.1	ncRNA:20   AGGCCCAAUUAGUACGAGAA   1   *||||||||||||||*|||| targets:1   CCCGGGUUAAUCAUGGUCUU   20 Target Full Sequence	1.5	PREDICTED: Brassica napus putative uncharacterized protein DDB_G0289963 (LOC106372309), transcript variant X1, mRNA	putative uncharacterized protein DDB_G0289963(LOC106372309)	coding protein	psRNATarget
XM_013871330.1	ncRNA:22   UGAGGCCCAAUUAGUACGAGAA   1   *=|==||||||||||||||||| targets:1370   UUUUUGGGUUAAUCAUGCUCUU   1391 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106430539 (LOC106430539), mRNA	uncharacterized LOC106430539(LOC106430539)	coding protein	psRNATarget
NM_001315553.1	ncRNA:22   UGAGGCCCAAUUAGUACGAGAA   1   |||||*|*|||||||||||||| targets:1873   ACUCCAGAUUAAUCAUGCUCUU   1894 Target Full Sequence	2.0	Brassica napus beta-fructofuranosidase, insoluble isoenzyme CWINV4-like (LOC106385410), mRNA	beta-fructofuranosidase, insoluble isoenzyme CWINV4-like(LOC106385410)	coding protein	psRNATarget
KP872760.1	ncRNA:22   UGAGGCCCAAUUAGUACGAGAA   1   |||||*|*|||||||||||||| targets:1873   ACUCCAGAUUAAUCAUGCUCUU   1894 Target Full Sequence	2.0	Brassica napus cell wall invertase 4-1 (CWINV4-1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_013888792.1	ncRNA:22   UGAGGCCCAAUUAGUACGAGAA   1   ||*=|||*|||||||||||||| targets:1861   ACCUCGGAUUAAUCAUGCUCUU   1882 Target Full Sequence	2.0	PREDICTED: Brassica napus UDP-glycosyltransferase 71B5-like (LOC106446953), mRNA	UDP-glycosyltransferase 71B5-like(LOC106446953)	coding protein	psRNATarget
XM_013817285.1	ncRNA:22   UGAGGCCCAAUUAGUACGAGAA   1   ||*=|||*|||||||||||||| targets:2907   ACCUCGGAUUAAUCAUGCUCUU   2928 Target Full Sequence	2.0	PREDICTED: Brassica napus UDP-glycosyltransferase 71B5-like (LOC106377115), mRNA	UDP-glycosyltransferase 71B5-like(LOC106377115)	coding protein	psRNATarget
XM_013844172.1	ncRNA:22   UGAGGCCCAAUUAGUACGAGAA   1   ||*||||||||||||||*|||* targets:14   ACCCCGGGUUAAUCAUGGUCUA   35 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106403330 (LOC106403330), mRNA	uncharacterized LOC106403330(LOC106403330)	coding protein	psRNATarget