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BaseInfo

ncRNA ID	novel_bna_miR680
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:40509398-40509474 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537633
Length	20
Mature sequence(if miRNA)	58 - AGAUUUUUGCGGAUUUGGUU - 77
Stem-loop(if miRNA)	-----UU    GGGU         -C   AUC   CU   AUU        UCCG    CAAAGAUUU  AGC   AUU  AAU   U        ||||    |||||||||  |||   |||  |||        AGGC    GUUUUUAGA  UCG   UGA  UUA   C UUGGUUU    ----         CU   -CU   CU   AAU
Stem-loop sequence	UUUCCGGGGUCAAAGAUUUCAGCAUCAUUCUAAUAUUUCUAAAUUUCAGUUCGCUUCAGAUUUUUGCGGAUUUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013786282.1	ncRNA:20   UUGGUUUAGGCGUUUUUAGA   1   ==**|||||||||||||||| targets:98   GGAGAAAUCCGCAAAAAUCU   117 Target Full Sequence	3.0	PREDICTED: Brassica napus putative GDP-L-fucose synthase 2 (LOC106346836), transcript variant X3, mRNA	putative GDP-L-fucose synthase 2(LOC106346836)	coding protein	psRNATarget
XM_013786281.1	ncRNA:20   UUGGUUUAGGCGUUUUUAGA   1   ==**|||||||||||||||| targets:189   GGAGAAAUCCGCAAAAAUCU   208 Target Full Sequence	3.0	PREDICTED: Brassica napus putative GDP-L-fucose synthase 2 (LOC106346836), transcript variant X2, mRNA	putative GDP-L-fucose synthase 2(LOC106346836)	coding protein	psRNATarget
XM_013786283.1	ncRNA:20   UUGGUUUAGGCGUUUUUAGA   1   ==**|||||||||||||||| targets:251   GGAGAAAUCCGCAAAAAUCU   270 Target Full Sequence	3.0	PREDICTED: Brassica napus putative GDP-L-fucose synthase 2 (LOC106346836), transcript variant X4, mRNA	putative GDP-L-fucose synthase 2(LOC106346836)	coding protein	psRNATarget
XM_013786280.1	ncRNA:20   UUGGUUUAGGCGUUUUUAGA   1   ==**|||||||||||||||| targets:263   GGAGAAAUCCGCAAAAAUCU   282 Target Full Sequence	3.0	PREDICTED: Brassica napus putative GDP-L-fucose synthase 2 (LOC106346836), transcript variant X1, mRNA	putative GDP-L-fucose synthase 2(LOC106346836)	coding protein	psRNATarget