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BaseInfo

ncRNA ID ath-miRf10613-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - CCACUCGACCACGAGGUCGAGUG - NA
Stem-loop(if miRNA)    AC         C C        --CA    ACAUCA
GAG  CACUCGACC C UGGUCGAG    GAGG      C
|||  ||||||||| | ||||||||    ||||
CUC  GUGAGCUGG G ACCAGCUC    CUUC      C
   CC         A C        ACCA    ACUUCA
Stem-loop sequence GAGACCACUCGACCCCCUGGUCGAGCAGAGGACAUCACCACUUCACUUCACCACUCGACCACGAGGUCGAGUGCCCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:23   GUGAGCUGGAGCACCAGCUCACC   1
  =||||||||||*|||||||||||
targets:2015   UACUCGACCUCUUGGUCGAGUGG   2037

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:23   GUGAGCUGGAGCACCAGCUCACC   1
  |||||||||*||||||||||||*
targets:1210   CACUCGACCCCGUGGUCGAGUGU   1232

2.0 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183005.1
ncRNA:23   GUGAGCUGGAGCACCAGCUCACC   1
  ||||||||||||*|||||||||*
targets:1865   CACUCGACCUCGAGGUCGAGUGA   1887

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:23   GUGAGCUGGAGCACCAGCUCACC   1
  |||||||||*||*||||||||||
targets:1924   CACUCGACCACGGGGUCGAGUGG   1946

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:23   GUGAGCUGGAGCACCAGCUCACC   1
  |||||||||*|||||||||||*|
targets:490   CACUCGACCCCGUGGUCGAGUAG   512

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget