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BaseInfo

ncRNA ID novel_bna_miR668
Species Brassica napus
Class miRNA
Genome position ChrA5:7829451-7829545 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537633
Length 20
Mature sequence(if miRNA) 1 - AGAAAUAAAUAUGGCUGUAG - 20
Stem-loop(if miRNA) --         GG      A      -UA  GUUUCAAAAAAAAAAUU
  ACAGCUGUA  UUAUUU UAGAGC   UG                 A
  |||||||||  |||||| ||||||   ||                 A
  UGUCGGUAU  AAUAAA AUUUCG   UU                 A
GA         -A      G      UGG  UAAGUCUCGUUAGUUCG
Stem-loop sequence ACAGCUGUAGGUUAUUUAUAGAGCUAUGGUUUCAAAAAAAAAAUUAAAGCUUGAUUGCUCUGAAUUUGGUGCUUUAGAAAUAAAUAUGGCUGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013845494.1
ncRNA:20   GAUGUCGGUAUAAAUAAAGA   1
  |*||||||*|||||||||||
targets:2337   CCACAGCCCUAUUUAUUUCU   2356

2.5 PREDICTED: Brassica napus oligopeptide transporter 4 (LOC106404826), mRNA oligopeptide transporter 4(LOC106404826) coding protein psRNATarget