ncRNA ID | novel_bna_miR668 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA5:7829451-7829545 [-] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537633 |
Length | 20 |
Mature sequence(if miRNA) | 1 - AGAAAUAAAUAUGGCUGUAG - 20 |
Stem-loop(if miRNA) |
--         GG      A      -UA  GUUUCAAAAAAAAAAUU   ACAGCUGUA  UUAUUU UAGAGC   UG                 A   |||||||||  |||||| ||||||   ||                 A   UGUCGGUAU  AAUAAA AUUUCG   UU                 A GA         -A      G      UGG  UAAGUCUCGUUAGUUCG |
Stem-loop sequence | ACAGCUGUAGGUUAUUUAUAGAGCUAUGGUUUCAAAAAAAAAAUUAAAGCUUGAUUGCUCUGAAUUUGGUGCUUUAGAAAUAAAUAUGGCUGUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013845494.1 |
|
2.5 | PREDICTED: Brassica napus oligopeptide transporter 4 (LOC106404826), mRNA | oligopeptide transporter 4(LOC106404826) | coding protein | psRNATarget |