Search result

BaseInfo

ncRNA ID novel_bna_miR649
Species Brassica napus
Class miRNA
Genome position ChrC6:23005985-23006151 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537612
Length 20
Mature sequence(if miRNA) 148 - CUUGGACUGAAGGGAGCUCC - 167
Stem-loop(if miRNA) --    UU   UG     CU A     UAAUAU    -       -C  A    C  C        C  CA     A   AAA   U
  AGCU  CUU  GUCCA  C UGGAG      GUGA GAUUUAA  UG CUCU GA UCAUUCAU CA  UACCA AUG   GAA A
  ||||  |||  |||||  | |||||      |||| |||||||  || |||| || |||||||| ||  ||||| |||   ||| U
  UCGA  GAA  CAGGU  G AUCUC      CACU CUAAGUU  AC GAGA CU AGUAAGUA GU  AUGGU UAC   CUU G
CC    GG   GU     UC C     ----UU    U       AA  A    U  U        A  AA     A   --C   U
Stem-loop sequence AGCUUUCUUUGGUCCACUCAUGGAGUAAUAUGUGAGAUUUAACUGACUCUCGACUCAUUCAUCCACAUACCAAAUGAAAGAAUAUGUUUCCCAUAUGGUAAAUGAAUGAAUGAUUCUAGAGACAAAUUGAAUCUUCACUUCUCUACGCUUGGACUGAAGGGAGCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KR076552.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:876   GGAGCUCCCUUCAUUCCAAU   895

2.5 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds NA coding protein psRNATarget
XM_013876648.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:978   GGAGCUCCCUUCAUUCCAAU   997

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876646.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1094   GGAGCUCCCUUCAUUCCAAU   1113

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013879558.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1024   GGAGCUCCCUUCAUUCCAAU   1043

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X3, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013863608.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1054   GGAGCUCCCUUCAUUCCAAU   1073

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876651.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1102   GGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X6, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013863607.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1074   GGAGCUCCCUUCAUUCCAAU   1093

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876650.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1102   GGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876649.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1102   GGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876645.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1102   GGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013894677.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1116   GGAGCUCCCUUCAUUCCAAU   1135

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X2, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013879555.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1267   GGAGCUCCCUUCAUUCCAAU   1286

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X1, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013879650.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1345   GGAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438484), mRNA transcription factor MYB104-like(LOC106438484) coding protein psRNATarget
XM_013828451.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1345   GGAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388394), mRNA transcription factor MYB104-like(LOC106388394) coding protein psRNATarget
XM_013828453.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1345   GGAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388396), mRNA transcription factor MYB104-like(LOC106388396) coding protein psRNATarget
XM_013879557.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1479   GGAGCUCCCUUCAUUCCAAU   1498

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X2, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013894678.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1569   GGAGCUCCCUUCAUUCCAAU   1588

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X3, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013894676.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1569   GGAGCUCCCUUCAUUCCAAU   1588

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X1, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013863605.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1646   GGAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863606.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1646   GGAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863609.1
ncRNA:20   CCUCGAGGGAAGUCAGGUUC   1
  |||||||||||||*|||||*
targets:1646   GGAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.