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BaseInfo

ncRNA ID	novel_bna_miR647
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:24815016-24815084 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495
Length	24
Mature sequence(if miRNA)	1 - AGAGAAGAUGAGAAAGCGGUUGAG - 24
Stem-loop(if miRNA)	---U           -   CA       UCUCUCUC     ACCGCUUUCUC UCU  UCUCUGU        U     ||||||||||| |||  |||||||        U     UGGCGAAAGAG AGA  AGAGACA        G GAGU           U   --       CUUUCUAC
Stem-loop sequence	UACCGCUUUCUCUCUCAUCUCUGUUCUCUCUCUUGCAUCUUUCACAGAGAAGAUGAGAAAGCGGUUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013856832.1	ncRNA:24   GAGUUGGCGAAAGAGUAGAAGAGA   1   *||--=|||||||||||=|||||| targets:157   GUC--UCGCUUUCUCAUUUUCUCU   178 Target Full Sequence	2.5	PREDICTED: Brassica napus ninja-family protein AFP2-like (LOC106416010), mRNA	ninja-family protein AFP2-like(LOC106416010)	coding protein	psRNATarget
XM_013790653.1	ncRNA:24   GAGU-UGGCGAAAGAGUAGAAGAGA   1   ||||-==||=||||||||||||||* targets:165   CUCACGUCGUUUUCUCAUCUUCUCC   189 Target Full Sequence	3.0	PREDICTED: Brassica napus protein STRICTOSIDINE SYNTHASE-LIKE 5-like (LOC106350810), mRNA	protein STRICTOSIDINE SYNTHASE-LIKE 5-like(LOC106350810)	coding protein	psRNATarget
XM_013878951.1	ncRNA:24   GAGU-UGGCGAAAGAGUAGAAGAGA   1   ||||-==||=||||||||||||||* targets:98   CUCACGUCGUUUUCUCAUCUUCUCC   122 Target Full Sequence	3.0	PREDICTED: Brassica napus protein STRICTOSIDINE SYNTHASE-LIKE 5-like (LOC106437929), mRNA	protein STRICTOSIDINE SYNTHASE-LIKE 5-like(LOC106437929)	coding protein	psRNATarget
XM_013824971.1	ncRNA:24   GAGUUGGCGA-AAGAGUAGAAGAGA   1   ||||-|||||-|||||||||||||* targets:85   CUCA-CCGCUCUUCUCAUCUUCUCC   108 Target Full Sequence	3.0	PREDICTED: Brassica napus protein disulfide isomerase-like 1-4 (LOC106385027), mRNA	protein disulfide isomerase-like 1-4(LOC106385027)	coding protein	psRNATarget
XM_013807570.1	ncRNA:24   GAGUUGGCGAAAGAGUAGAAGAGA   1   |||=-=||=||||||||||||||* targets:126   CUCG-UCGUUUUCUCAUCUUCUCC   148 Target Full Sequence	3.0	PREDICTED: Brassica napus protein STRICTOSIDINE SYNTHASE-LIKE 5-like (LOC106367740), mRNA	protein STRICTOSIDINE SYNTHASE-LIKE 5-like(LOC106367740)	coding protein	psRNATarget