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BaseInfo

ncRNA ID	novel_bna_miR640
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:60597413-60597549 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537612
Length	22
Mature sequence(if miRNA)	1 - UUAGCGGAAUAUAAGAACCAUC - 22
Stem-loop(if miRNA)	--                   -A                        G           C       AC   UUAGCGGAAUAUAAGAACC  UCUCUUAACUUUUAACUAAAAAAA UUAAGAACCGG UCUUAAA  U   |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||| |||||||  C   AAUUGCCUUAUAUUCUUGG  AGAGAAUUGAAAAUUGAUUUUUUU GAUUCUUGGCC AGAAUUU  U AG                   GC                        -           A       AU
Stem-loop sequence	UUAGCGGAAUAUAAGAACCAUCUCUUAACUUUUAACUAAAAAAAGUUAAGAACCGGCUCUUAAAACUCUUAUUUAAGAACCGGUUCUUAGUUUUUUUAGUUAAAAGUUAAGAGACGGGUUCUUAUAUUCCGUUAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830747.1	ncRNA:22   CUACCAAGAAUAUAAGGCGAUU   1   ***|||||||||||||||*||| targets:25   ACGGGUUCUUAUAUUCCGAUAA   46 Target Full Sequence	1.5	PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X1, mRNA	CBS domain-containing protein CBSCBSPB2-like(LOC106390313)	coding protein	psRNATarget
XM_013830748.1	ncRNA:22   CUACCAAGAAUAUAAGGCGAUU   1   ***|||||||||||||||*||| targets:25   ACGGGUUCUUAUAUUCCGAUAA   46 Target Full Sequence	1.5	PREDICTED: Brassica napus CBS domain-containing protein CBSCBSPB2-like (LOC106390313), transcript variant X2, mRNA	CBS domain-containing protein CBSCBSPB2-like(LOC106390313)	coding protein	psRNATarget
XM_013865935.1	ncRNA:22   CUACCAAGAAUAUAAGGCGAUU   1   *|||*|||*||||||||||||= targets:9709   AAUGAUUCAUAUAUUCCGCUAG   9730 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106425218 (LOC106425218), mRNA	uncharacterized LOC106425218(LOC106425218)	coding protein	psRNATarget
XM_013886323.1	ncRNA:22   CUACCAAGAAUAUAAGGCGAUU   1   *|||*|||*||||||||||||= targets:9671   AAUGAUUCAUAUAUUCCGCUAG   9692 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106444897 (LOC106444897), transcript variant X2, mRNA	uncharacterized LOC106444897(LOC106444897)	coding protein	psRNATarget
XM_013886322.1	ncRNA:22   CUACCAAGAAUAUAAGGCGAUU   1   *|||*|||*||||||||||||= targets:7143   AAUGAUUCAUAUAUUCCGCUAG   7164 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106444897 (LOC106444897), transcript variant X1, mRNA	uncharacterized LOC106444897(LOC106444897)	coding protein	psRNATarget
XM_013854219.1	ncRNA:22   CUACCAAGAAUAUAAGGCGAUU   1   ||*||*||*||||||||||||* targets:999   GAAGGCUCGUAUAUUCCGCUAU   1020 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106413445 (LOC106413445), mRNA	uncharacterized LOC106413445(LOC106413445)	coding protein	psRNATarget