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BaseInfo

ncRNA ID	novel_bna_miR638
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:680168-680384 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537612
Length	23
Mature sequence(if miRNA)	1 - UCAAUGAAAGGUAUGAUUCCCUU - 23
Stem-loop(if miRNA)	--A       -CA           AAU  A        A     --   C  ------     C              AA      U  G            C    UAU  A    GGAAUCA   CUUUCAUUGAU   GA AUCAAUAG GAAUG  CUA UG      AGCUC UACAGGCGAUUAGA  AUCUAA AU GCGAUAGUCUUG UCUC   GA G    |||||||   |||||||||||   || |||||||| |||||  ||| ||      ||||| ||||||||||||||  |||||| || |||||||||||| ||||   ||    CCUUAGU   GAAAGUAACUA   CU UAGUUAUC CUUAC  GGU AC      UCGAG AUGUUCGUUAAUCU  UAGAUU UA CGCUAUUAGAAC AGAG   CU U UUC       AUG           CUU  C        G     UA   A  CACUAG     A              CC      C  G            A    UAU  G
Stem-loop sequence	AGGAAUCACACUUUCAUUGAUAAUGAAAUCAAUAGAGAAUGCUACUGAGCUCCUACAGGCGAUUAGAAAAUCUAAUAUGGCGAUAGUCUUGCUCUCUAUGAAGUGUCUAUGAGAACAAGAUUAUCGCGAUCUUAGAUCCUCUAAUUGCUUGUAAGAGCUGAUCACCAAUGGAUCAUUCGCUAUUGAUCUCUUCAUCAAUGAAAGGUAUGAUUCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013820218.1	ncRNA:23   UUCCCUUAGUAUGGAAAGUAACU   1   ||||||||||||||||||||||| targets:1724   AAGGGAAUCAUACCUUUCAUUGA   1746 Target Full Sequence	0.0	PREDICTED: Brassica napus putative UDP-arabinose 4-epimerase 4 (LOC106380457), transcript variant X3, mRNA	putative UDP-arabinose 4-epimerase 4(LOC106380457)	coding protein	psRNATarget
XM_013820216.1	ncRNA:23   UUCCCUUAGUAUGGAAAGUAACU   1   ||||||||||||||||||||||| targets:1808   AAGGGAAUCAUACCUUUCAUUGA   1830 Target Full Sequence	0.0	PREDICTED: Brassica napus putative UDP-arabinose 4-epimerase 4 (LOC106380457), transcript variant X1, mRNA	putative UDP-arabinose 4-epimerase 4(LOC106380457)	coding protein	psRNATarget
XM_013820217.1	ncRNA:23   UUCCCUUAGUAUGGAAAGUAACU   1   ||||||||||||||||||||||| targets:1824   AAGGGAAUCAUACCUUUCAUUGA   1846 Target Full Sequence	0.0	PREDICTED: Brassica napus putative UDP-arabinose 4-epimerase 4 (LOC106380457), transcript variant X2, mRNA	putative UDP-arabinose 4-epimerase 4(LOC106380457)	coding protein	psRNATarget
XM_013820219.1	ncRNA:23   UUCCCUUAGUAUGGAAAGUAACU   1   ||||||||||||||||||||||| targets:1879   AAGGGAAUCAUACCUUUCAUUGA   1901 Target Full Sequence	0.0	PREDICTED: Brassica napus putative UDP-arabinose 4-epimerase 4 (LOC106380457), transcript variant X4, mRNA	putative UDP-arabinose 4-epimerase 4(LOC106380457)	coding protein	psRNATarget
XM_013872268.1	ncRNA:23   UUCCCUUAGUAUGGAAAGUAACU   1   ||||||||||||||||||=|||| targets:246   AAGGGAAUCAUACCUUUCGUUGA   268 Target Full Sequence	1.5	PREDICTED: Brassica napus disease resistance protein TAO1-like (LOC106431462), mRNA	disease resistance protein TAO1-like(LOC106431462)	coding protein	psRNATarget
XM_013820596.1	ncRNA:23   UUCCCUUAGUAUGGAAAGUAACU   1   ||||||||||||||||||=|||| targets:127   AAGGGAAUCAUACCUUUCGUUGA   149 Target Full Sequence	1.5	PREDICTED: Brassica napus disease resistance protein TAO1-like (LOC106380765), mRNA	disease resistance protein TAO1-like(LOC106380765)	coding protein	psRNATarget