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BaseInfo

ncRNA ID	ath-miRf10608-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CUCGACCUCUUGGUCGAGUG - NA
Stem-loop(if miRNA)	G         U           G   U -A     UG  G   GA    -AC             G     -AA  G    AGUGG GA AAG CACUCGACC GGGGGUCGAGU AGG G  UCGAG  GU UUA  AGAU   UCGACUUCCAGGU GAGUG   GA GUCG     U  A ||| ||||||||| ||||||||||| ||| |  |||||  || |||  ||||   ||||||||||||| |||||   || ||||     | UUU GUGAGCUGG UCUCCAGCUCG UCC C  AGUUC  UA GGU  UCUG   AGCUGGGGGUCCA CUCGU   CU UAGU     A  G    G         U           -   U GA     --  G   UC    GUU             G     AUC  G    GGUGA GU
Stem-loop sequence	AAGGCACUCGACCUGGGGGUCGAGUGAGGUGAUCGAGUGGUGUUAGAAGAUACUCGACUUCCAGGUGGAGUGAAGAGGUCGAGUGGUGAAGUGAAGUGGUGAUGUCCUAUGCUCGACCUGGGGGUCGAUUGGUCUCUUGGGAUCUUGAAGCUCCUGCUCGACCUCUUGGUCGAGUGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||||||||||| targets:576   CACUCUACCAAGAGGUCGAG   595 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   ||||||||||*||||||||| targets:517   CACUCGACCAUGAGGUCGAG   536 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   ||||||||||*||||||||| targets:1151   CACUCGACCACGAGGUCGAG   1170 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||||||*|||||||||| targets:764   CACUCGACCCAGAGGUCGAG   783 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   ||||||||||*||||||||| targets:1527   CACUCGACCACGAGGUCGAG   1546 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||*|||||||||| targets:927   CACUCUACCUAGAGGUCGAG   946 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
BT012022.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:35   CACUCUACCAACAGGUCGAG   54 Target Full Sequence	2.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:146   CACUCUACCAACAGGUCGAG   165 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
AY065245.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |*|||||||||||||||*|| targets:507   CCCUCGACCAAGAGGUCUAG   526 Target Full Sequence	2.5	Arabidopsis thaliana At5g10630 mRNA sequence	NA	coding protein	psRNATarget
NM_203034.2	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |*|||||||||||||||*|| targets:507   CCCUCGACCAAGAGGUCUAG   526 Target Full Sequence	2.5	Arabidopsis thaliana flowering-promoting factor-like protein mRNA	flowering-promoting factor-like protein(AT5G10625)	coding protein	psRNATarget
EF183192.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:318   CACUCUACCAACAGGUCGAG   337 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:366   CACUCUACCAACAGGUCGAG   385 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:414   CACUCUACCAACAGGUCGAG   433 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:693   CACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:741   CACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:789   CACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:693   CACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:741   CACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GUGAGCUGGUUCUCCAGCUC   1   |||||*|||||*|||||||| targets:789   CACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget