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BaseInfo

ncRNA ID	novel_bna_miR616
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:46135942-46136090 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537609
Length	20
Mature sequence(if miRNA)	1 - AUAUUCUGCUAAAAACCUCA - 20
Stem-loop(if miRNA)	-   -  C                  CC    C             U                         UA  GAG UU UUAGCGGAAUAUAAGAAU  GUCU UUAAUUUUUAAUU AAAAAGUUAAGAACCGGUUCUUAAA  A  ||| || ||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||  G  CUC AA AAUCGUCUUAUAUUCUUG  UAGA AAUUGAAAAUUGA UUUUUCAAUUCUUGGCCGAGAAUUU  A A   C  A                  CA    A             U                         UG
Stem-loop sequence	GAGUUCUUAGCGGAAUAUAAGAAUCCGUCUCUUAAUUUUUAAUUUAAAAAGUUAAGAACCGGUUCUUAAAUAAGAGUUUUAAGAGCCGGUUCUUAACUUUUUUAGUUAAAAGUUAAAAGAUACGUUCUUAUAUUCUGCUAAAAACCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013795040.1	ncRNA:20   ACUCCAAAAAUCGUCUUAUA   1   |*|*|||||||||||||||| targets:1340   UCAUGUUUUUAGCAGAAUAU   1359 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At4g39590-like (LOC106354745), mRNA	F-box/kelch-repeat protein At4g39590-like(LOC106354745)	coding protein	psRNATarget
XM_013818168.1	ncRNA:20   ACUCCAAAAAUCGUCUUAUA   1   *|||||*|*||||||||||| targets:2201   CGAGGUAUGUAGCAGAAUAU   2220 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377955 (LOC106377955), mRNA	uncharacterized LOC106377955(LOC106377955)	coding protein	psRNATarget
XM_013809853.1	ncRNA:20   ACUCCAAAAAUCGUCUUAUA   1   *|||||*|*||||||||||| targets:2234   CGAGGUAUGUAGCAGAAUAU   2253 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106369738 (LOC106369738), mRNA	uncharacterized LOC106369738(LOC106369738)	coding protein	psRNATarget