Search result

BaseInfo

ncRNA ID novel_bna_miR608
Species Brassica napus
Class miRNA
Genome position ChrC1:40933599-40933689 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495;SRR1363496
Length 21
Mature sequence(if miRNA) 1 - UGAGCCAAAGAUGACUUGUCG - 21
Stem-loop(if miRNA) --U         A          AUU        AA   UAAA   GA
   GAGCCAAAG UGACUUGUCG   UUACCGAU  UUC    ACU  U
   ||||||||| ||||||||||   ||||||||  |||    |||
   CUCGGUUUC GUUGAACGGC   GAUGGUUA  AAG    UGG  A
UGC         A          --C        --   -UCA   UU
Stem-loop sequence UGAGCCAAAGAUGACUUGUCGAUUUUACCGAUAAUUCUAAAACUGAUAUUGGUACUGAAAUUGGUAGCCGGCAAGUUGACUUUGGCUCCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013880479.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  =|=|||*||||||||||||||
targets:1170   UGGCAACUCAUCUUUGGCUCA   1190

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-2-like (LOC106439112), mRNA nuclear transcription factor Y subunit A-2-like(LOC106439112) coding protein psRNATarget
XM_013829031.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  =|=|||*||||||||||||||
targets:1164   UGGCAACUCAUCUUUGGCUCA   1184

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-2-like (LOC106388859), mRNA nuclear transcription factor Y subunit A-2-like(LOC106388859) coding protein psRNATarget
XM_013825513.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1070   AGGCAACUCAUCUUUGGCUCA   1090

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106385600), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10-like(LOC106385600) coding protein psRNATarget
XM_013825512.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1073   AGGCAACUCAUCUUUGGCUCA   1093

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106385600), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC106385600) coding protein psRNATarget
XM_013814333.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1037   AGGCAACUCAUCUUUGGCUCA   1057

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X4, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013814332.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1048   AGGCAACUCAUCUUUGGCUCA   1068

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X3, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013814331.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1071   AGGCAACUCAUCUUUGGCUCA   1091

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013860052.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1063   AGGCAACUCAUCUUUGGCUCA   1083

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X4, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013860051.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1066   AGGCAACUCAUCUUUGGCUCA   1086

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X3, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013860050.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1069   AGGCAACUCAUCUUUGGCUCA   1089

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013814334.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1223   AGGCAACUCAUCUUUGGCUCA   1243

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X5, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013860049.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1072   AGGCAACUCAUCUUUGGCUCA   1092

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013814330.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  *|=|||*||||||||||||||
targets:1226   AGGCAACUCAUCUUUGGCUCA   1246

2.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013813078.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  =**||||||||*|||||||||
targets:634   UCUCAAGUCAUAUUUGGCUCA   654

2.5 PREDICTED: Brassica napus homeobox protein ATH1-like (LOC106372798), mRNA homeobox protein ATH1-like(LOC106372798) coding protein psRNATarget
XM_013879323.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  ||*|||**|||||||||||||
targets:682   CGCCAAUGCAUCUUUGGCUCA   702

3.0 PREDICTED: Brassica napus ras-related protein RABH1b (LOC106438223), mRNA ras-related protein RABH1b(LOC106438223) coding protein psRNATarget
XM_013828416.1
ncRNA:21   GCUGUUCAGUAGAAACCGAGU   1
  ||*|||**|||||||||||||
targets:691   CGCCAAUGCAUCUUUGGCUCA   711

3.0 PREDICTED: Brassica napus ras-related protein RABH1b (LOC106388367), mRNA ras-related protein RABH1b(LOC106388367) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.