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BaseInfo

ncRNA ID	ath-miRf10605-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CUCGACCUCUUGGUCGAGUGGU - NA
Stem-loop(if miRNA)	GGUG   G         U           G   U -A     UG  G   GA    -               G     -AA  G    AGUGG GA     AAA CACUCGACC GGGGGUCGAGC AGG G  UCGAG  GU UCA  AGAU ACUCGACUUCCAGGU GAGUG   GA GUCG     U  A     ||| ||||||||| ||||||||||| ||| |  |||||  || |||  |||| ||||||||||||||| |||||   || ||||     |     UUU GUGAGCUGG UCUCCAGCUCG UCC C  AGUUC  UA GGU  UCUG UGAGCUGGGGGUCCA CUCGU   CU UAGU     A  G -CUG   G         U           -   U GA     --  G   UC    G               G     AUC  G    GGUGA GU
Stem-loop sequence	GGUGAAAGCACUCGACCUGGGGGUCGAGCGAGGUGAUCGAGUGGUGUCAGAAGAUACUCGACUUCCAGGUGGAGUGAAGAGGUCGAGUGGUGAAGUGAAGUGGUGAUGUCCUAUGCUCGACCUGGGGGUCGAGUGGUCUCUUGGGAUCUUGAAGCUCCUGCUCGACCUCUUGGUCGAGUGGUUUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:22   UG-GUGAGCUGGUUCUCCAGCUC   1   ||-|||||*|||||||||||||| targets:573   ACUCACUCUACCAAGAGGUCGAG   595 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   ||||||||||||*||||||||| targets:1149   ACCACUCGACCACGAGGUCGAG   1170 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |||||||||||*|||||||||| targets:762   ACCACUCGACCCAGAGGUCGAG   783 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   ||||||||||||*||||||||| targets:1525   ACCACUCGACCACGAGGUCGAG   1546 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   *=||||||||||*||||||||| targets:515   UUCACUCGACCAUGAGGUCGAG   536 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   *=|||||*|||*|||||||||| targets:925   CUCACUCUACCUAGAGGUCGAG   946 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
BT012022.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:33   AUCACUCUACCAACAGGUCGAG   54 Target Full Sequence	2.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:144   AUCACUCUACCAACAGGUCGAG   165 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:316   AUCACUCUACCAACAGGUCGAG   337 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:364   AUCACUCUACCAACAGGUCGAG   385 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:412   AUCACUCUACCAACAGGUCGAG   433 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:691   AUCACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:739   AUCACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:787   AUCACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:691   AUCACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:739   AUCACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUUCUCCAGCUC   1   |=|||||*|||||*|||||||| targets:787   AUCACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget