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BaseInfo

ncRNA ID novel_bna_miR580
Species Brassica napus
Class miRNA
Genome position ChrC9:22297019-22297163 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537604
Length 27
Mature sequence(if miRNA) 119 - AGGUUGCUUUGAGAAUGAAGAAGUAUC - 145
Stem-loop(if miRNA) ---AGG      -           AAGU   A        -UU  G     G G    UUUUUGGA        UU
      UUGCUU UGAGAAUGAAG    AUC UCCUCUGC   AG UGCUU A UAGG        UAUAUUUU  G
      |||||| |||||||||||    ||| ||||||||   || ||||| | ||||        ||||||||
      GAUGAG ACUCUUAUUUU    UAG AGGGGAUG   UU ACGAG U GUUC        AUAUGGGG  G
GAUUUA      U           --GU   -        UUC  G     G -    UGUCAAUG        UA
Stem-loop sequence AGGUUGCUUUGAGAAUGAAGAAGUAUCAUCCUCUGCUUAGGUGCUUGAGUAGGUUUUUGGAUAUAUUUUUUGGAUGGGGUAUAGUAACUGUCUUGUGGAGCAGUUCUUGUAGGGGAGAUUGUUUUAUUCUCAUGAGUAGAUUUAG