ncRNA ID | novel_bna_miR562 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC3:4447680-4447829 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537604;SRR537857;SRR538066 |
Length | 26 |
Mature sequence(if miRNA) | 1 - GGAGUUUUUAGCGGAAUAUAAGAAUC - 26 |
Stem-loop(if miRNA) |
--  A                    -AUCC   A                    G   U  C  UC       AC   GG GUUUUUAGCGGAAUAUAAGA     UCU UUAACUUUUAACUAAAAAAG UAA AA CG  UCUUAAA  U   || ||||||||||||||||||||     ||| |||||||||||||||||||| ||| || ||  |||||||  C   CC CAAGAAUCGCCUUAUAUUCU     AGA AAUUGAAAAUUGAUUUUUUC AUU UU GC  AGAAUUU  U CA  C                    GGUAC   G                    G   C  A  CA       AU |
Stem-loop sequence | GGAGUUUUUAGCGGAAUAUAAGAAUCCUCUAUUAACUUUUAACUAAAAAAGGUAAUAACCGUCUCUUAAAACUCUUAUUUAAGAACCGAUUCUUAGCUUUUUUAGUUAAAAGUUAAGAGACAUGGUCUUAUAUUCCGCUAAGAACCCCAC |