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BaseInfo

ncRNA ID novel_bna_miR558
Species Brassica napus
Class miRNA
Genome position ChrC3:3816260-3816409 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537604;SRR537857;SRR538066
Length 26
Mature sequence(if miRNA) 125 - GGAGUUUUUAGCGGAAUAUAAGAAUC - 150
Stem-loop(if miRNA) --  A                    -AUCC   A                    G   U  C  UC       AC
  GG GUUUUUAGCGGAAUAUAAGA     UCU UUAACUUUUAACUAAAAAAG UAA AA CG  UCUUAAA  U
  || ||||||||||||||||||||     ||| |||||||||||||||||||| ||| || ||  |||||||  C
  CC CAAGAAUCGCCUUAUAUUCU     AGA AAUUGAAAAUUGAUUUUUUC AUU UU GC  AGAAUUU  U
CA  C                    GGUAC   G                    G   C  A  CA       AU
Stem-loop sequence GGAGUUUUUAGCGGAAUAUAAGAAUCCUCUAUUAACUUUUAACUAAAAAAGGUAAUAACCGUCUCUUAAAACUCUUAUUUAAGAACCGAUUCUUAGCUUUUUUAGUUAAAAGUUAAGAGACAUGGUCUUAUAUUCCGCUAAGAACCCCAC