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BaseInfo

ncRNA ID novel_bna_miR550
Species Brassica napus
Class miRNA
Genome position ChrA9:43266871-43267011 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537604;SRR537609;SRR537612;SRR537633;SRR538066
Length 26
Mature sequence(if miRNA) 1 - GAGGAUUUUACGUGAAUAACGGUAUC - 26
Stem-loop(if miRNA) --     U          UA CG                 U      CUAAC    -AAA  C  U     UA
  GAGGA UUUACGUGAA  A  GUAUCAUCGUUAUUUCC CGUAAA     GACA    AC UU CGUCG  A
  ||||| ||||||||||  |  ||||||||||||||||| ||||||     ||||    || || |||||
  CUCCU GGAUGCACUU  U  UAUAGUAGCAAUAAAGG GCAUUU     CUGU    UG AA GUAGC  A
UG     U          UG AU                 U      ----A    GCAG  U  U     UG
Stem-loop sequence GAGGAUUUUACGUGAAUAACGGUAUCAUCGUUAUUUCCUCGUAAACUAACGACAAAAACCUUUCGUCGUAAAGUCGAUGUAAUGUGACGUGUCAUUUACGUGGAAAUAACGAUGAUAUUAUGUUUCACGUAGGUUCCUCGU